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2026-04-06gnu: delly: Update to 1.7.3.Hugo Buddelmeijer
* gnu/packages/bioinformatics.scm (delly): Update to 1.7.3. Merges: https://codeberg.org/guix/guix/pulls/7710 Change-Id: Ib88fe130f3073bbda7725d00a15cf2045c5d60e6 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-04-02gnu: r-bpcells: Do not build bundled highway library.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bpcells)[source]: Remove bundled highway sources. [arguments]: Fix check. [inputs]: Add google-highway. Change-Id: Ib70e7f9f64053b9e840c8c5f04e966beb4cf2869
2026-03-28gnu: python-pysam: Update to 0.23.3.Nicolas Graves
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.23.3. [native-inputs]: Replace python-cython-0 by python-cython. Remove python-wheel. Change-Id: I4e93e7ab1a9e763d2d84b6b7601a64e918b0eda8 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-03-25gnu: cnvkit: Update to 0.9.13.Andreas Enge
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.13. Change-Id: I69da49fe80b2e350ff351d39182dcf1e8cf97eb4
2026-03-24gnu: cwltool: Update to 3.1.20260315121657.Arun Isaac
* gnu/packages/bioinformatics.scm (cwltool): Update to 3.1.20260315121657. Change-Id: I1c4503aa65a638a905f8b49235578564fa40802f
2026-03-23gnu: bpp-core: Build with default gcc.Efraim Flashner
* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Remove gcc-10. [arguments]: Add a phase to add a missing include statement. Change-Id: I53cd0c86df7cf5476149c22746c1de971d6770e8
2026-03-23gnu: skewer: Relabel as version 0.2.2.Efraim Flashner
This is the tag for the given commit. * gnu/packages/bioinformatics.scm (skewer)[version]: Set to 0.2.2. Change-Id: I7f24b0320b5e20ba36e56c0a0708ea64ec7ba86a
2026-03-23gnu: skewer: Build with default gcc.Efraim Flashner
* gnu/packages/bioinformatics.scm (skewer)[arguments]: Add make-flag to set the C++ standard used. [native-inputs]: Remove gcc-10. Change-Id: I96515ec527cc0e2639def0b9a0b76d2ccb1062b9
2026-03-20gnu: jellyfish: Fix build on python-3.12.Nicolas Graves
* gnu/packages/bioinformatics.scm (jellyfish)[native-inputs]: Add python-setuptools. Change-Id: I742e32681380277151a0d4b4986d81cc6112c380 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-03-20gnu: python-schema-salad: Update to 8.9.20251102115403.Nicolas Graves
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to 8.9.20251102115403. [arguments]<#:test-flags>: Update them. <#:phases>: Drop phase 'skip-failing-tests. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-03-20gnu: Reference the inherited inputs values.Ludovic Courtès
This commit was made by running this command: sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm … and then reverting individual hunks where the change would trigger unbound variable warnings or other issues (such as ‘native-inputs’ is bound in the body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined just above). Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab
2026-03-20gnu: Reference the inherited ‘arguments’ value.Ludovic Courtès
This commit was made by running this command: sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm … and then: 1. reverting changes from ‘gnu/packages/rust.scm’ and ‘gnu/packages/java.scm’ since they would incur derivation changes and/or breakage; 2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’; 3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’, which use ‘substitute-keyword-arguments’ for arguments that are not inherited (and thus ‘arguments’ would be unbound); 4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’ which make bogus assumptions about inherited arguments. Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c
2026-03-19gnu: plink: Build with gcc-7.Efraim Flashner
* gnu/packages/bioinformatics.scm (plink)[native-inputs]: Remove gcc-8, add gcc-7. Change-Id: Idd2182ba90509d6bff4fc733e2b6750a210c9dfb
2026-03-19gnu: plink: Add missing input.Efraim Flashner
* gnu/packages/bioinformatics.scm (plink)[inputs]: Add libxcrypt. Change-Id: I5994c2d02424972f0c1473ea3baf0a496db029bb
2026-03-18gnu: python-metacells: Fix build.Hugo Buddelmeijer
* gnu/packages/bioinformatics.scm (python-metacells): Fix build. [arguments]<#:phases>: Add pre-sanity-check phase. [homepage]: Update with redirect. Change-Id: I9e6c2dfd4d944a589f87716ab8347a161ff630c5 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-03-18gnu: Remove fastx-toolkit.Andreas Enge
* gnu/packages/bioinformatics.scm (fastx-toolkit): Delete variable. Change-Id: Ie710da17d23a04cfaafc1de28b2dc6aae23ccfd4
2026-03-18gnu: deacon: Update to 0.15.0.Spencer King
* gnu/packages/bioinformatics.scm (deacon): Update to 0.15.0. * gnu/packages/rust-crates.scm (lookup-cargo-inputs): Update entry for deacon. Change-Id: I6f1a8812d251228e50eabd9f0105c40ed4261a80 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2026-03-18gnu: r-voltron: Update to 0.2.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.5. [propagated-inputs]: Add r-voltronstore and simpleitk. Change-Id: I292c4e6b81b23471589c965449766d72d197e200
2026-03-18gnu: Add r-voltronstore.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltronstore): New variable. Change-Id: Iebeb6fd970aa1dc1a862f4ff4f628b1d8e2fe2d0
2026-03-12gnu: python-decoupler: Update to 2.1.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-decoupler): Update to 2.1.4. Change-Id: I1fdc99e586340ae42530cc209d2e4fe9e22b2292
2026-03-12gnu: python-cell2cell: Update to 0.8.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cell2cell): Update to 0.8.4. Change-Id: I0210208e0d61f46a707e352d45c9246c473200d0
2026-03-12gnu: python-gseapy: Update to 1.1.12.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-gseapy): Update to 1.1.12. * gnu/packages/rust-crates.scm (lookup-cargo-inputs): Update entry for python-gseapy. Change-Id: Ia912e4cb5aac93cb2aa523baccd9cc5bfbff6a6a
2026-03-12gnu: Add deacon.Spencer King
* gnu/packages/bioinformatics.scm (deacon): New variable. * gnu/packages/rust-crates.scm (lookup-cargo-inputs): Add entry for deacon. Change-Id: I148a0bdc56abf5dbe68a8cdf81f6fe2944645f4d Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2026-03-07gnu: r-singlet: Update to 0.99.8-1.ef4a374.Ricardo Wurmus
Yes, this is an update, even though the patch level used to be .26 and now is .8. That's post-semantic versioning. * gnu/packages/bioinformatics.scm (r-singlet): Update to 0.99.8-1.ef4a374. [propagated-inputs]: Add r-statmod. Change-Id: I95d1d60966c68cb8f66d79b6af6cab82bcf16a62
2026-03-07gnu: r-voltron: Replace custom phase with #:skipped-tests.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltron)[arguments]: Remove phase 'skip-bad-tests; provide #:skipped-tests argument. Change-Id: I00ddc80185972d5bf7e01856b8ab0c47ffcf3fd2
2026-03-06gnu: bwa: Update to 0.7.19.Spencer King
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.19. Merges: https://codeberg.org/guix/guix/pulls/6925 Change-Id: I066277d3746e291426156ae36a70c8a51a59f23f Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-03-05gnu: Pin old pybind11 version.Gabriel Wicki
* gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2). (python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree, python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change reference to pybind11-2. * gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp), gnu/packages/bioinformatics.scm (python-metacells, python-strawc, python-coolbox, python-pyspoa, python-scvelo), gnu/packages/chemistry.scm (avogadrolibs), gnu/packages/computer-architecture.scm (gem5), gnu/packages/duckdb.scm (python-duckdb), gnu/packages/electronics.scm (nextpnr, prjtrellis), gnu/packages/engineering.scm (python-orocos-kinematics-dynamics), gnu/packages/geo.scm (ogs-serial), gnu/packages/graphics.scm (openshadinglanguage, openimageio), gnu/packages/image-processing.scm (opencolorio), gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx, onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe, python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn, python-dlib), gnu/packages/maths.scm (python-accupy, python-ducc0), gnu/packages/networking.scm (libcamera), gnu/packages/opencl.scm (python-pyopencl), gnu/packages/package-management.scm (python-libmambapy), gnu/packages/physics.scm (python-brille, python-gofit), gnu/packages/python-check.scm (python-xdoctest), gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy, python-iminuit, python-osqp, python-pyamg, python-qdldl, python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma), gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal, gr-satellites, limesuite-ng), gnu/packages/simulation.scm (fenics, python-dolfin-adjoint), gnu/packages/statistics.scm (python-diptest, python-george), gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2. Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>
2026-02-27gnu: Deprecate swig and swig-next in vafor of swig-4.0 and swig-4.4.Sharlatan Hellseher
This is a following up change after discussion in <https://codeberg.org/guix/guix/pulls/3701#issuecomment-11048648>. * gnu/packages/swig.scm (swig-4.0, swig-4.4): New variables. (swig, swig-next): Deprecate swig and swig-next in vafor of swig-4.0 and swig-4.4. * gnu/packages/accessibility.scm (libbraille) * gnu/packages/apparmor.scm (libapparmor) * gnu/packages/bioinformatics.scm (htseq, imp, libsbml) * gnu/packages/bootloaders.scm (dtc, u-boot) * gnu/packages/disk.scm (volume-key) * gnu/packages/dns.scm (ldns, unbound) * gnu/packages/electronics.scm (opensta, trilinos-serial-xyce, uhdm) * gnu/packages/embedded.scm (python-libmpsse) * gnu/packages/engineering.scm (freecad, kicad, meep, mpb) * gnu/packages/fabric-management.scm (ibutils) * gnu/packages/game-development.scm (python-pybox2d) * gnu/packages/games.scm (kiki) * gnu/packages/geo.scm (saga) * gnu/packages/gnome.scm (libratbag) * gnu/packages/gnucash.scm (gnucash) * gnu/packages/gnupg.scm (python-gpg) * gnu/packages/graphviz.scm (graphviz) * gnu/packages/guile-xyz.scm (guile-xapian) * gnu/packages/image.scm (mypaint) * gnu/packages/instrumentation.scm (babeltrace, lttng-tools) * gnu/packages/kodi.scm (kodi) * gnu/packages/libftdi.scm (libftdi) * gnu/packages/linux.scm (libnl) * gnu/packages/llvm.scm (lldb) * gnu/packages/machine-learning.scm (openmm, tensorflow-lite) * gnu/packages/maths.scm (nlopt) * gnu/packages/ncurses.scm (stfl) * gnu/packages/oneapi.scm (python-onetbb) * gnu/packages/pretty-print.scm (highlight) * gnu/packages/python-crypto.scm (python-m2crypto) * gnu/packages/python-graphics.scm (python-pivy) * gnu/packages/radio.scm (hamlib, soapysdr) * gnu/packages/security-token.scm (python-pyscard, python-yubikey-manager) * gnu/packages/selinux.scm (libselinux, libsemanage, python-setools) * gnu/packages/speech.scm (pocketsphinx) * gnu/packages/statistics.scm (python-openturns, r-spams) * gnu/packages/tbb.scm (python-tbb) * gnu/packages/version-control.scm (subversion) * gnu/packages/video.scm (libopenshot, mlt, obs) [native-inputs]: Remove swig; add swig-4.0. * gnu/packages/geo.scm (gdal) * gnu/packages/graph.scm (python-faiss) [inputs]: Remove swig; add swig-4.0. * gnu/packages/games.scm (fifengine): Update to 0.4.2. [inputs]: Remove swig; add swig-4.0. [native-inputs]: Likewise. * gnu/packages/image-processing.scm (insight-toolkit, simpleitk) * gnu/packages/pdf.scm (mupdf, python-pymupdf) [native-inputs]: Remove swig-next; add swig-4.4. Change-Id: I544bef0a0b1a81004596fad9f116610ef5cb52ae
2026-02-25gnu: wfmash: Install split_approx_mappings_in_chunks script.Arun Isaac
* gnu/packages/bioinformatics.scm (wfmash)[arguments]: Add install-scripts phase. [inputs]: Add python-wrapper. Change-Id: I1a68399d1b14e9783a2a2c2fe8d65fc777de18b6
2026-02-24gnu: lammps-serial: Finalize update to 250722.3.Leo Orveillon
* gnu/packages/bioinformatics.scm (lammps-serial): Adapt to updated lammps. [configure-flags]: Same as lammps, but remove MPI and openMP related ones. [phases]{link-lammps-so}: Change binary names due to LAMMPS_MACHINE flag removal. [inputs]: Remove pnetcdf. Replace hdf5-parallel-openmpi with hdf5. Change-Id: I585e75fc7894c3e38f7b144f400193c9a767741a Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-02-24gnu: lammps: Update to 250722.3 and refacto.Leo Orveillon
* gnu/packages/bioinformatics.scm (lammps): Update to 250722.3. [build-system]: Switch from gnu to cmake. [configure-flags]: Add more packages. [phases]{link-lammps-so}: Link lammps libraries to the main binary. [inputs]: Add fftw, n2p2, gsl, hdf5-parallel-openmpi, openblas, libomp, eigen, netcdf, pnetcdf, python-numpy. Remove gfortran. [native-inputs]: Add pkg-config, python-cython, patchelf, gfortran. Change-Id: I65f0739c1df11981691aa54868e5dbf69ac29496 Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-02-23gnu: Remove wfa2-lib.Andreas Enge
* gnu/packages/bioinformatics.scm (wfa2-lib): Delete variable. Fixes: guix/guix#3705 Change-Id: Ib19e25a84c982ab7a6403a9578adf2ecbaa46b9b
2026-02-23gnu: Remove vcflib.Andreas Enge
* gnu/packages/bioinformatics.scm (vcflib): Delete variable. Change-Id: I3ffdcfdbd8a3bb9d573fc0d5dc03da59acdd482e
2026-02-23gnu: Remove freebayes.Andreas Enge
* gnu/packages/bioinformatics.scm (freebayes): Delete variable. Change-Id: I19fadd85a384cb4520160cfab04b114e5ca47cec
2026-02-20gnu: r-voltron: Skip bad tests.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltron)[arguments]: Add phase 'skip-bad-tests. Change-Id: I51b33fd613f9eb744b4fd51400cad55e5b2c65ef
2026-02-20gnu: r-giotto: Update to 4.2.2-1.7988300.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-giotto): Update to 4.2.2-1.7988300. [source]: Fetch from true upstream. [arguments]: Disable tests. [propagated-inputs]: Add r-arrow, r-biocparallel, r-biocsingular, r-bluster, r-checkmate, r-future-apply, r-giottoclass, r-giottoutils, r-giottovisuals, r-limma, r-matrixgenerics, r-sparsematrixstats, r-terra, and r-uwot; remove r-cowplot, r-deldir, r-farver, r-ggrepel, r-irlba, r-lfa, r-magick, r-magrittr, r-matrixstats, r-qvalue, r-rcolorbrewer, r-rcpp, r-reshape2, and r-rtsne. [native-inputs]: Add r-testthat. [home-page]: Update to true upstream. Change-Id: I938e0c19fcc68fe4b100646fe051ff1a42411092
2026-02-20gnu: Add r-giottovisuals.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-giottovisuals): New variable. Change-Id: I403d712ac4ce99cd5c08215ea83d5bf3cf2dd50a
2026-02-20gnu: Add r-giottodata.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-giottodata): New variable. Change-Id: Icaed4b19a20e866523703e2241025943096954ba
2026-02-20gnu: Add r-giottoutils.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-giottoutils): New variable. Change-Id: Ia7acb1fc364f7076cf73f08d9335cd05a23b5f43
2026-02-20gnu: Add r-giottoclass.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-giottoclass): New variable. Change-Id: Icf95b3fd1f6dd4f14a13bc71d52a6febf6713b3e
2026-02-20gnu: r-anndatar: Update to 1.0.1.Ricardo Wurmus
anndataR is now on Bioconductor. * gnu/packages/bioinformatics.scm (r-anndatar): Move from here... * gnu/packages/bioconductor.scm (r-anndatar): ...to here; update to 1.0.1. [properties]: Remove updater-extra-native-inputs. [inputs]: Add python-wrapper and python-anndata. [native-inputs]: Add r-processx, r-s4vectors, r-seurat, r-spelling, and r-withr; remove r-vctrs. [propagated-inputs]: Add r-cli, r-lifecycle, r-purrr, r-reticulate, and r-rlang. Change-Id: I2410f00b33451c60d8b1657ac30a6c1b014e260d
2026-02-20gnu: r-voltron: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-voltron): Update to 0.2.3. [inputs]: Replace python with python-wrapper. Change-Id: I180622af927e2386d45a4dadad4ebdad6e7ab6ac
2026-02-20gnu: r-imagearray: Update to 0.99.6-1.2f90694.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-imagearray): Update to 0.99.6-1.2f90694. [propagated-inputs]: Add r-ebimage, r-rarr, r-rhdf5, and r-s4vectors; remove r-zarrarray. [native-inputs]: Add r-knitr and r-testthat. [synopsis]: Update. [description]: Update. Change-Id: Ife5670dacaad9c5b737ab282e7fc939126e845d8
2026-02-20gnu: r-hdf5dataframe: Update to 0.99.3-1.61c52cb.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5dataframe): Update to 0.99.3-1.61c52cb. [propagated-inputs]: Add r-h5mread. [synopsis]: Update to what upstream provides. Change-Id: Ie46ac432d6635a4aa824f17b46bfd0b6b002a1c0
2026-02-19gnu: blast+: Add 'sqlite' dependency.Simon Tournier
Follow up of 80e27d57bf64311ea7b510889871811156ee63a4. * gnu/packages/bioinformatics.scm (blast+)[inputs]: Add sqlite. Fixes: guix/guix#3731 Change-Id: Ifdb7b20bd800f4eaab83c9cbb5b756489b230f6b Signed-off-by: Andreas Enge <andreas@enge.fr>
2026-02-18gnu: bandage: Support Wayland.Danny Milosavljevic
* gnu/packages/bioinformatics.scm (bandage)[inputs]: Add qtwayland-5. Change-Id: Ib4836ddef55236547bc6710d94090a3f8d163786
2026-02-17gnu: Remove tophat.Andreas Enge
* gnu/packages/bioinformatics.scm (tophat): Delete variable. Fixes: guix/guix#5660 Change-Id: I57eb5355b1eb3da2acbd539e5f795c66f3e1fae6
2026-02-15gnu: Remove pin on go-1.23 by setting -vet=off in tests.Ethan Blanton
This is a follow up commit 87661cea77be67d7fdfcc607ee3a621d005e909c: "Pin some golang packages to use go-1.23" wich adds "-vet=off" to test args so that make check works with go 1.24+. * gnu/packages/authentication.scm: (oauth2l) * gnu/packages/bioinformatics.scm: (go-github-com-biogo-store) * gnu/packages/containers.scm: (dive) * gnu/packages/databases.scm: (go-github-com-cockroachdb-pebble) * gnu/packages/education.scm: (exercism) * gnu/packages/file-systems.scm: (fscrypt, gocryptfs) * gnu/packages/golang-check.scm: (go-github-com-cheekybits-is, go-github-com-coder-quartz, go-github-com-data-dog-go-sqlmock, go-github-com-google-gofuzz, go-github-com-matryer-is, go-github-com-onsi-ginkgo, go-github-com-onsi-ginkgo-v2, go-github-com-onsi-gomega, go-github-com-otiai10-mint, go-github-com-smarty-assertions, go-github-com-smarty-gunit, go-github-com-warpfork-go-testmark, go-sigs-k8s-io-randfill) * gnu/packages/golang-crypto.scm: (go-github-com-99designs-keyring, go-github-com-blanu-dust, go-github-com-chmduquesne-rollinghash) * gnu/packages/golang-maths.scm: (go-github-com-montanaflynn-stats, go-gonum-org-v1-gonum) * gnu/packages/golang-vcs.scm: (go-github-com-jiangxin-goconfig) * gnu/packages/golang-web.scm: (go-git-sr-ht-emersion-gqlclient, go-git-sr-ht-rockorager-go-jmap, go-github-com-apex-log, go-github-com-apex-log-bootstrap, go-github-com-cenkalti-backoff-v4, go-github-com-digitalocean-godo, go-github-com-donovanhide-eventsource, go-github-com-emersion-go-smtp, go-github-com-flosch-pongo2-v6, go-github-com-go-chi-chi-v5, go-github-com-go-jose-go-jose-v3, go-github-com-go-openapi-errors, go-github-com-go-openapi-runtime, go-github-com-go-openapi-validate, go-github-com-gobwas-httphead, go-github-com-goccy-go-json, go-github-com-gogo-protobuf, go-github-com-google-safehtml, go-github-com-jcmturner-gokrb5-v8, go-github-com-jhillyerd-enmime, go-github-com-jlaffaye-ftp, go-github-com-jmespath-go-jmespath, go-github-com-json-iterator-go, go-github-com-labbsr0x-goh, go-github-com-makeworld-the-better-one-go-gemini, go-github-com-ovn-kubernetes-libovsdb, go-github-com-pascaldekloe-goe, go-github-com-perimeterx-marshmallow, go-github-com-pion-stun, go-github-com-pion-stun-v2, go-github-com-pion-stun-v3, go-github-com-rcrowley-go-metrics, go-github-com-swaggo-swag, go-github-com-urfave-negroni, go-github-com-urfave-negroni-v3, go-github-com-xeipuuv-gojsonschema, go-maunium-net-go-mautrix) * gnu/packages/golang-xyz.scm: (go-github-com-d5-tengo-v2, go-github-com-godbus-dbus, go-github-com-hashicorp-hcl-v2, go-github-com-itchyny-go-flags, go-github-com-jedib0t-go-pretty-v6, go-github-com-jessevdk-go-flags, go-github-com-mattn-go-shellwords, go-github-com-moby-sys-mountinfo, go-github-com-nlpodyssey-spago, go-github-com-pingcap-errors, go-github-com-pmezard-go-difflib, go-github-com-russross-blackfriday-v2, go-go-mongodb-org-mongo-driver, go-go4-org, go-k8s-io-klog-v2, go-sigs-k8s-io-kustomize-kyaml, go-zgo-at-zstd) * gnu/packages/irc.scm: (soju) * gnu/packages/password-utils.scm: (aws-vault) * gnu/packages/text-editors.scm: (micro) * gnu/packages/version-control.scm: (hut) * gnu/packages/video.scm: (ytarchive) * gnu/packages/web-browsers.scm: (bombadillo) * gnu/packages/web.scm: (webhook) Change-Id: If7ffae01869404796467f8deed29a03e7a7020d7 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-02-14gnu: r-saige: Update to 1.5.1-1.7172b7f.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-saige): Update to 1.5.1-1.7172b7f. Change-Id: I076cd1247efff7d311beae9b0dabc13ee13ea694
2026-02-11gnu: Add alignoth.Alexis Simon
* gnu/packages/bioinformatics.scm (alignoth): New entry. * gnu/packages/rust-crates.scm (lookup-cargo-inputs)[alignoth]: New entry. Change-Id: I35c0daf9d930f196551de1e5618b0569314a03db Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
generated by cgit v1.3 (git 2.53.0) at 2026-05-27 18:18:25 +0000