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Age	Commit message (Expand)	Author
2025-10-24	gnu: python-cython-3: Mark as deprecated.	Sharlatan Hellseher
2025-10-23	gnu: stringtie: Update to 3.0.2.	Andreas Enge
2025-10-23	gnu: Remove htslib-1.12.	Andreas Enge
2025-10-23	gnu: Remove htslib-for-stringtie.	Andreas Enge
2025-10-23	gnu: stringtie: Update input.	Andreas Enge
2025-10-23	gnu: python-doubletdetection: Corrected deprecated input.	Andreas Enge
2025-10-23	gnu: Remove htslib-1.19.	Andreas Enge
2025-10-23	gnu: Remove samtools-1.14.	Andreas Enge
2025-10-23	gnu: Remove bcftools-1.12.	Andreas Enge
2025-10-23	gnu: Remove samtools-1.12.	Andreas Enge
2025-10-23	gnu: Remove htslib-1.10.	Andreas Enge
2025-10-23	gnu: Remove bcftools-1.10.	Andreas Enge
2025-10-23	gnu: Remove samtools-1.10.	Andreas Enge
2025-10-23	gnu: Remove htslib-for-samtools-1.2.	Andreas Enge
2025-10-23	gnu: Remove samtools-1.2.	Andreas Enge
2025-10-23	gnu: Use ‘define-deprecated-package’ for deprecated packages.	Ludovic Courtès
2025-10-23	gnu: Remove python-velocyto.	Andreas Enge
2025-10-23	gnu: Remove python-plastid.	Andreas Enge
2025-10-23	gnu: instrain: Update to 1.10.0-0.6180be7.	Sharlatan Hellseher
2025-10-22	gnu: libsbml: Update to 5.20.5.	Andreas Enge
2025-10-21	gnu: python-pyahocorasick: Update to 2.2.0.	Hartmut Goebel
2025-10-21	gnu: python-ngesh: Remove development inputs.	Hartmut Goebel
2025-10-21	gnu: python-metacells: Remove development inputs	Hartmut Goebel
2025-10-20	gnu: python-ont-fast5-api: Fix tests.	Sharlatan Hellseher
2025-10-20	gnu: vbz-compression: Update to 1.0.13.	Sharlatan Hellseher
2025-10-18	gnu: cwltool: Update to 3.1.20250925164626.	Hugo Buddelmeijer
2025-10-18	gnu: python-schema-salad: Update to 8.9.20250723145140.	Hugo Buddelmeijer
2025-10-16	gnu: scregseg: Update to 0.1.3-0.78ebff8.	Sharlatan Hellseher
2025-10-13	gnu: gdcm: Unbundle some dependencies.	Jake Forster
2025-10-13	gnu: gdcm: Update to 3.2.2.	Jake Forster
2025-10-11	gnu: python-intervaltree: Move to python-xyz.	Sharlatan Hellseher
2025-10-09	gnu: python-metacells: Remove development native-inputs.	Nicolas Graves
2025-10-09	gnu: python-pybiomart: Remove development native-inputs.	Nicolas Graves
2025-10-07	gnu: macs: Fix build.	Sharlatan Hellseher
2025-10-06	gnu: Remove fast5.	Anderson Torres
2025-10-06	gnu: python-logomaker: Update to 0.8.7.	Sharlatan Hellseher
2025-10-06	gnu: python-htsget: Disable tests.	Sharlatan Hellseher
2025-10-06	gnu: python-gffutils: Fix tests.	Sharlatan Hellseher
2025-10-06	gnu: python-episcanpy: Fix sanity check.	Sharlatan Hellseher
2025-10-06	gnu: python-cyvcf2: Update to 0.31.2.	Sharlatan Hellseher
2025-10-06	gnu: python-cgatcore: Update to 0.6.16.	Sharlatan Hellseher
2025-10-06	gnu: python-bx-python: Update to 0.14.0.	Sharlatan Hellseher
2025-10-05	gnu: python-cwlformat: Fix tests.	Sharlatan Hellseher
2025-10-01	gnu: python-pyvcf3: Fix tests.	Sharlatan Hellseher
2025-10-01	gnu: umi-tools: Fix tests.	Sharlatan Hellseher
2025-09-30	gnu: libxml2: Update to 2.14.6; deprecate python-libxml2.	John Kehayias
2025-09-28	gnu: stpipeline: Update to 2.0.0.	Hugo Buddelmeijer
2025-09-28	gnu: python-taggd: Update to 0.4.0.	Hugo Buddelmeijer
2025-09-26	gnu: python-bcbio-gff: Update to 0.7.1.	Hugo Buddelmeijer
2025-09-26	gnu: gemma: Refresh package style.	Sharlatan Hellseher