gnu: python-cython-3: Mark as deprecated.

This is a followup to 941b6ff1c11be3ba73e4e67bc661bd0eed3e9d58 commit.

Replace all python-cython-3 occurrences with python-cython.

* gnu/packages/python-xyz.scm (python-cython-3): Deprecate variable.

* gnu/packages/algebra.scm (python-fpylll, python-flint)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/astronomy.scm (python-astropy, python-astroscrappy,
python-halotools, python-healpy, python-libstempo, python-lofar-h5plot,
python-losoto, python-photutils, python-pyxsim, python-regions,
python-reproject, python-sncosmo, python-sndata, python-stcal,
python-yt)[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/bioinformatics.scm (macs-3, python-pyrodigal):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/build-tools.scm (meson-python)[propagated-inputs]: Remove
python-cython-3; add python-cython.
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/databases.scm: (python-adbc-driver-manager,
python-psycopg, python-pyarrow)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/finance.scm (python-ta-lib)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/game-development.scm (python-pygame-ce)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/geo.scm (python-pyogrio, python-cf-units)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/machine-learning.scm: (python-scikit-learn,
python-opentsne)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/maths.scm: (python-cylp, python-petsc4py,
python-primecountpy, python-slepc4py)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/python-check.scm (python-line-profiler)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-compression.scm (python-blosc2)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-graphics.scm (python-vispy)[native-inputs]:
Remove python-cython-3; add python-cython.

* gnu/packages/python-science.scm: (python-pykdtree, python-qutip,
python-scikit-misc, python-scikit-surprise, python-pandas-2,
python-vaex-core)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-web.scm: (python-aiohttp, python-falcon,
python-yarl, python-uvloop)[native-inputs]: Remove python-cython-3; add
python-cython.

* gnu/packages/python-xyz.scm: (python-logbook, python-netcdf4,
python-pyyaml, python-propcache, python-pywavelets, python-symengine,
python-cysignals, python-pyemd, python-rbfly)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/sagemath.scm: (python-cypari2, python-pplpy, sage)
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/sphinx.scm (python-sphinx)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/statistics.scm: (python-statsmodels, python-pyreadstat):
[native-inputs]: Remove python-cython-3; add python-cython.

* gnu/packages/tor.scm (onionshare-cli)[native-inputs]: Remove
python-cython-3; add python-cython.

* gnu/packages/xorg.scm (xpra)[native-inputs]: Remove python-cython-3;
add python-cython.

Change-Id: I38038d2ab18e6a7b549070083d6e4c5beb8b0293

1 files changed, 6 insertions, 6 deletions

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 12a0dc7d20b..cb701a0c7d5 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -2406,7 +2406,7 @@ Evapotranspiration using various standard methods.")
               (with-directory-excursion (site-packages inputs outputs)
                 (for-each delete-file (find-files "." "test*"))))))))
     (native-inputs
-     (list python-cython-3 python-pytest python-setuptools python-wheel))
+     (list python-cython python-pytest python-setuptools python-wheel))
     (propagated-inputs
      (list python-numpy))
     (home-page "https://github.com/storpipfugl/pykdtree")
@@ -2591,7 +2591,7 @@ factorization routine for quasi-definite linear system.")
                 (with-directory-excursion #$output
                   (apply invoke "pytest" "-vv" test-flags))))))))
     (propagated-inputs (list python-numpy python-packaging python-scipy))
-    (native-inputs (list python-cython-3
+    (native-inputs (list python-cython
                          python-numpy
                          python-packaging
                          python-pytest
@@ -2975,7 +2975,7 @@ logic, also known as grey logic.")
                              python-spin))
     (native-inputs (list gfortran
                          pkg-config
-                         python-cython-3
+                         python-cython
                          python-meson-python
                          python-numpy
                          python-pytest
@@ -3106,7 +3106,7 @@ be accessible and easy to use in many contexts.")
               ;; permission.
               (setenv "HOME" "/tmp"))))))
     (native-inputs
-     (list python-cython-3
+     (list python-cython
            python-pandas
            python-pytest
            python-setuptools
@@ -3839,7 +3839,7 @@ tissue-specificity metrics for gene expression.")
     (native-inputs
      (list meson-python
            python-beautifulsoup4
-           python-cython-3
+           python-cython
            python-html5lib
            python-lxml
            python-matplotlib
@@ -4590,7 +4590,7 @@ readable.")
            python-six
            python-tabulate))
     (native-inputs
-     (list python-pytest python-cython-3 python-setuptools python-wheel))
+     (list python-pytest python-cython python-setuptools python-wheel))
     (home-page "https://www.github.com/maartenbreddels/vaex")
     (synopsis "Core of Vaex library for exploring tabular datasets")
     (description "Vaex is a high performance Python library for lazy