From cbad86a9854736eed8248ad7b172e27ffd83aa5e Mon Sep 17 00:00:00 2001 From: Sharlatan Hellseher Date: Fri, 24 Oct 2025 09:22:20 +0100 Subject: gnu: python-cython-3: Mark as deprecated. This is a followup to 941b6ff1c11be3ba73e4e67bc661bd0eed3e9d58 commit. Replace all python-cython-3 occurrences with python-cython. * gnu/packages/python-xyz.scm (python-cython-3): Deprecate variable. * gnu/packages/algebra.scm (python-fpylll, python-flint)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/astronomy.scm (python-astropy, python-astroscrappy, python-halotools, python-healpy, python-libstempo, python-lofar-h5plot, python-losoto, python-photutils, python-pyxsim, python-regions, python-reproject, python-sncosmo, python-sndata, python-stcal, python-yt)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/bioinformatics.scm (macs-3, python-pyrodigal): [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/build-tools.scm (meson-python)[propagated-inputs]: Remove python-cython-3; add python-cython. [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/databases.scm: (python-adbc-driver-manager, python-psycopg, python-pyarrow)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/finance.scm (python-ta-lib)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/game-development.scm (python-pygame-ce)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/geo.scm (python-pyogrio, python-cf-units)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/machine-learning.scm: (python-scikit-learn, python-opentsne)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/maths.scm: (python-cylp, python-petsc4py, python-primecountpy, python-slepc4py)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-check.scm (python-line-profiler)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-compression.scm (python-blosc2)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-graphics.scm (python-vispy)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-science.scm: (python-pykdtree, python-qutip, python-scikit-misc, python-scikit-surprise, python-pandas-2, python-vaex-core)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-web.scm: (python-aiohttp, python-falcon, python-yarl, python-uvloop)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-xyz.scm: (python-logbook, python-netcdf4, python-pyyaml, python-propcache, python-pywavelets, python-symengine, python-cysignals, python-pyemd, python-rbfly)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/sagemath.scm: (python-cypari2, python-pplpy, sage) [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/sphinx.scm (python-sphinx)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/statistics.scm: (python-statsmodels, python-pyreadstat): [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/tor.scm (onionshare-cli)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/xorg.scm (xpra)[native-inputs]: Remove python-cython-3; add python-cython. Change-Id: I38038d2ab18e6a7b549070083d6e4c5beb8b0293 --- gnu/packages/python-science.scm | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) (limited to 'gnu/packages/python-science.scm') diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 12a0dc7d20b..cb701a0c7d5 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -2406,7 +2406,7 @@ Evapotranspiration using various standard methods.") (with-directory-excursion (site-packages inputs outputs) (for-each delete-file (find-files "." "test*")))))))) (native-inputs - (list python-cython-3 python-pytest python-setuptools python-wheel)) + (list python-cython python-pytest python-setuptools python-wheel)) (propagated-inputs (list python-numpy)) (home-page "https://github.com/storpipfugl/pykdtree") @@ -2591,7 +2591,7 @@ factorization routine for quasi-definite linear system.") (with-directory-excursion #$output (apply invoke "pytest" "-vv" test-flags)))))))) (propagated-inputs (list python-numpy python-packaging python-scipy)) - (native-inputs (list python-cython-3 + (native-inputs (list python-cython python-numpy python-packaging python-pytest @@ -2975,7 +2975,7 @@ logic, also known as grey logic.") python-spin)) (native-inputs (list gfortran pkg-config - python-cython-3 + python-cython python-meson-python python-numpy python-pytest @@ -3106,7 +3106,7 @@ be accessible and easy to use in many contexts.") ;; permission. (setenv "HOME" "/tmp")))))) (native-inputs - (list python-cython-3 + (list python-cython python-pandas python-pytest python-setuptools @@ -3839,7 +3839,7 @@ tissue-specificity metrics for gene expression.") (native-inputs (list meson-python python-beautifulsoup4 - python-cython-3 + python-cython python-html5lib python-lxml python-matplotlib @@ -4590,7 +4590,7 @@ readable.") python-six python-tabulate)) (native-inputs - (list python-pytest python-cython-3 python-setuptools python-wheel)) + (list python-pytest python-cython python-setuptools python-wheel)) (home-page "https://www.github.com/maartenbreddels/vaex") (synopsis "Core of Vaex library for exploring tabular datasets") (description "Vaex is a high performance Python library for lazy -- cgit v1.3