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2026-03-20gnu: Reference the inherited inputs values.Ludovic Courtès
This commit was made by running this command: sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm … and then reverting individual hunks where the change would trigger unbound variable warnings or other issues (such as ‘native-inputs’ is bound in the body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined just above). Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab
2026-03-20gnu: Reference the inherited ‘arguments’ value.Ludovic Courtès
This commit was made by running this command: sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm … and then: 1. reverting changes from ‘gnu/packages/rust.scm’ and ‘gnu/packages/java.scm’ since they would incur derivation changes and/or breakage; 2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’; 3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’, which use ‘substitute-keyword-arguments’ for arguments that are not inherited (and thus ‘arguments’ would be unbound); 4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’ which make bogus assumptions about inherited arguments. Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c
2026-03-13gnu: openfoam-org: Fix build.Andreas Enge
* gnu/packages/simulation.scm (openfoam-org)[inputs]: Replace vtk by vtk-9.5, which fixes the build; and fmt-11 by fmt, which are the same. Merges guix/guix!7052 Fixes: guix/guix#3783 Change-Id: Ifac2256ce0f3541fb79a4d89c9affeee22d73fe1 Signed-off-by: Cayetano Santos <csantosb@inventati.org>
2026-03-06gnu: Remove python-dolfin-adjoint.Andreas Enge
* gnu/packages/simulation.scm (python-dolfin-adjoint): Delete variable. Fixes: guix/guix#6128 Change-Id: I86bf93403a7cf222b9ae89cb0e786b9b86384d04
2026-03-05gnu: Pin old pybind11 version.Gabriel Wicki
* gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2). (python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree, python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change reference to pybind11-2. * gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp), gnu/packages/bioinformatics.scm (python-metacells, python-strawc, python-coolbox, python-pyspoa, python-scvelo), gnu/packages/chemistry.scm (avogadrolibs), gnu/packages/computer-architecture.scm (gem5), gnu/packages/duckdb.scm (python-duckdb), gnu/packages/electronics.scm (nextpnr, prjtrellis), gnu/packages/engineering.scm (python-orocos-kinematics-dynamics), gnu/packages/geo.scm (ogs-serial), gnu/packages/graphics.scm (openshadinglanguage, openimageio), gnu/packages/image-processing.scm (opencolorio), gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx, onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe, python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn, python-dlib), gnu/packages/maths.scm (python-accupy, python-ducc0), gnu/packages/networking.scm (libcamera), gnu/packages/opencl.scm (python-pyopencl), gnu/packages/package-management.scm (python-libmambapy), gnu/packages/physics.scm (python-brille, python-gofit), gnu/packages/python-check.scm (python-xdoctest), gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy, python-iminuit, python-osqp, python-pyamg, python-qdldl, python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma), gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal, gr-satellites, limesuite-ng), gnu/packages/simulation.scm (fenics, python-dolfin-adjoint), gnu/packages/statistics.scm (python-diptest, python-george), gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2. Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b Signed-off-by: Gabriel Wicki <gabriel@erlikon.ch>
2026-02-14gnu: openfoam-com: Update to 2512.Andreas Enge
* gnu/packages/simulation.scm (openfoam-com): Update to 2512. Change-Id: Id1961be4899ad5139f33ee59c298085eda25e9ff
2026-02-07gnu: fenics: Fix tests.Sharlatan Hellseher
* gnu/packages/simulation.scm (fenics): [arguments] <test-flags>: Skip two more tests. [native-inputs]: Add pythn-numpy-1. Change-Id: Ic41cb4f6f92b89cffd87d43b617d34dce756efd9
2026-02-07gnu: Remove python-coverage native-input from some packages.Nicolas Graves
Remove python-coverage from [native-inputs] in the following packages as not required for build/tests/install: * gnu/packages/check.scm: (python-pytest-flakes) * gnu/packages/cpp.scm: (cpplint) * gnu/packages/jupyter.scm: (python-nbclassic) * gnu/packages/machine-learning.scm (onnx, python-pytorch-lightning) (python-torchmetrics) * gnu/packages/openstack.scm: (python-hacking) * gnu/packages/python-xyz.scm: (python-lsp-jsonrpc, python-nodeenv) * gnu/packages/simulation.scm: (python-dolfin-adjoint) * gnu/packages/version-control.scm: (pre-commit) Change-Id: I2c5e14f4aa28906ceee054c857e6abeeb122ad52 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-02-07gnu: Remove python-flake8 native-input from some packages.Nicolas Graves
Remove python-flake8 from [native-inputs] in the following packages as not required for build/tests/install: * gnu/packages/bioinformatics.scm: (python-doubletdetection) * gnu/packages/ebook.scm: (calibre) * gnu/packages/graph.scm: (python-pygsp) * gnu/packages/machine-learning.scm: (python-pymanopt, python-pyro-api) * gnu/packages/python-web.scm: (python-furl) * gnu/packages/python-xyz.scm: (python-jinja2-cli) * gnu/packages/simulation.scm: (python-dolfin-adjoint) * gnu/packages/vpn.scm: (sshuttle) * gnu/packages/music.scm (python-mutagen): [arguments]<#:test-flags>: Ignore flake8 quality tests. [native-inputs]: Remove python-flake8. Change-Id: I2789b8711faf3aa60a4bfa2062f95616e216d6c3 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2026-01-25gnu: python-fenics-ffc: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-fenics-ffc): [propagated-inputs]: Add python-numpy-1. Change-Id: I57a991c70947babc1734660c1d6723789ef77466 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-fenics-ufl-2019: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-fenics-ufl-2019): [inputs]: Remove python-numpy. [propagated-inputs]: Add python-numpy-1 Change-Id: I3171b24924f08a6210504ee03b3726a18609b186 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-meshio: Skip some tests.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-meshio)[arguments]<test-flags>: Skip some NumPy incompatible failing tests. Change-Id: I48e782b7eb2920c12777bda20a1f3d2753fcf657 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: sumo: Update to 1.25.0.Hartmut Goebel
* gnu/packages/simulation.scm (sumo): Update to 1.25.0. Change-Id: I6cf32f91ca651784f53477e217e1b901240d2c21
2025-12-21gnu: Add python-simpy.Francisco-Galindo
* gnu/packages/simulation.scm (python-simpy): New variable. Change-Id: Ic95e6b0656dc2e2deffb543491c64ad5ae14632c Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-03gnu: openfoam-com: Update to 2506.Reza Housseini
* gnu/packages/simulation.scm (openfoam-com): Update to 2506. [source]: Switch to git-fetch. Remove snippets. [arguments]: Add parent variable to replace version for inherited package. Change-Id: I2c79e98e621516dfe0e950a41b9abb515da43af3 Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-12-03gnu: openfoam-org: Update to 13.Reza Housseini
* gnu/packages/simulation.scm (openfoam-org): Update to 13. [source]: Switch to git-fetch. Move snippets to phases. [native-inputs, inputs]: Move runtime dependencies from native-inputs to inputs. Add dependencies for paraview to build plugin. Switch to Qt6. [arguments]: Reorder phases, use configure phase for configuration. Add version suffix to OpenFOAM install folder. Add phase to patch version. Add phase to patch paraview. Wrap the binaries with the environment variables sourced from bashrc. Change-Id: I26a313fa3aab22bff5a743890c6ffb0d56857f0b Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-11-28gnu: boost: Update to 1.89.0.Greg Hogan
* gnu/packages/boost.scm (boost-for-source-highlight): Rename this ... (boost-1.83): ... to this. (boost-numpy): Inherit from boost-1.83. * gnu/packages/pretty-print.scm (source-highlight): Update accordingly. * gnu/packages/boost.scm (boost): Update to 1.89.0. [source]: Remove patches. * gnu/packages/boost.scm (mdds) [propagated-inputs]: Replace boost with boost-1.83. * gnu/packages/astronomy.scm (aoflagger), * gnu/packages/embedded.scm (cc-tool), * gnu/packages/games.scm (0ad, vcmi), * gnu/packages/image.scm (gpick), * gnu/packages/maths.scm (highfive), * gnu/packages/plotutils.scm (asymptote) [native-inputs]: Replace boost with boost-1.83. * gnu/packages/audio.scm (guitarix, supercollider), * gnu/packages/bioconductor.scm (r-mzr), * gnu/packages/bioinformatics.scm (ataqv, bless, express, isolator, metabat, r-velocytom, rsem, sailfish, salmon), * gnu/packages/bittorrent.scm (libtorrent-rasterbar), * gnu/packages/code.scm (sourcetrail), * gnu/packages/compression.scm (innoextract), * gnu/packages/cpp.scm (lager), * gnu/packages/crypto.scm (cryfs), * gnu/packages/electronics.scm (nextpnr, prjpeppercorn, prjtrellis, pulseview), * gnu/packages/emulators.scm (mupen64plus-video-glide64mk2), * gnu/packages/engineering.scm (cadabra2, freecad, libigl, openscad, prusa-slicer), * gnu/packages/file-systems.scm (snapper), * gnu/packages/finance.scm (ledger), * gnu/packages/game-development.scm (dds), * gnu/packages/games.scm (colobot, fifengine, knightsgame, leela-zero, pokerth, supertux, wesnoth, wesnoth-server), * gnu/packages/geo.scm (gplates), * gnu/packages/gnucash.scm (gnucash), * gnu/packages/graph.scm (python-graph-tool), * gnu/packages/graphics.scma (openshadinglanguage), * gnu/packages/i2p.scm (i2pd), * gnu/packages/image-viewers.scm (luminance-hdr), * gnu/packages/kde-graphics.scm (krita), * gnu/packages/mail.scm (astroid), * gnu/packages/medical.scm (orthanc, orthanc-mysql, orthanc-postgresql), * gnu/packages/messaging.scm (libphonenumber), * gnu/packages/mpd.scm (ncmpcpp), * gnu/packages/networking.scm (kismet), * gnu/packages/opencog.scm (cogutil), * gnu/packages/photo.scm (hugin), * gnu/packages/poedit.scm (poedit), * gnu/packages/radio.scm (gnuradio), * gnu/packages/rdf.scm (lucene++), * gnu/packages/serialization.scm (avro-cpp), * gnu/packages/simulation.scm (fenics-dolfin), * gnu/packages/version-control.scm (gource), * gnu/packages/video.scm (aegisub, mkvtoolnix), * gnu/packages/web.scm (websocketpp) [inputs]: Replace boost with boost-1.83. * gnu/packages/libreoffice.scm (libcmis): Update to 0.6.2-00a85bf6. (librevenge): Update to 0.0.5. [arguments]<#:configure-flags>: Remove reference to boost system component for which the compatibility stub has been removed. * gnu/packages/serialization.scm (msgpack-cxx): Update to 7.0.0. Change-Id: I247f3eaecde3de3fe227586b840f0312b4797ee1
2025-11-28gnu: googletest: Update to 1.17.0.Aaron Covrig
* gnu/packages/check.scm (googletest): Update to 1.17.0 (googletest-1.12): Add variable. * gnu/packages/glib.scm (sdbus-c++) [native-inputs]: Replace googletest-1.17 with googletest. * gnu/packages/compression.scm (pzstd) [native-inputs, inputs]: Replace googletest with googletest-1.8. * gnu/packages/cpp.scm (c++-gsl), * gnu/packages/engineering.scm (cura-engine), * gnu/packages/password-utils.scm (pwsafe) [native-inputs]: Replace googletest with googletest-1.13. * gnu/packages/crypto.scm (crc32c), * gnu/packages/engineering.scm (lib3mf), * gnu/packages/fontutils.scm (opentype-sanitizer), * gnu/packages/games.scm (openclonk), * gnu/packages/gnome.scm (gnome-commander), * gnu/packages/machine-learning.scm (qnnpack), * gnu/packages/maths.scm (ruy), * gnu/packages/serialization.scm (libnop) [native-inputs]: Replace googletest with googletest-1.12. * gnu/packages/machine-learning.scm (fann), * gnu/packages/maths.scm (boolector), * gnu/packages/parallel.scm (clog), * gnu/packages/simulation.scm (sumo), * gnu/packages/telephony.scm (sipp) [native-inputs]: Replace googletest with googletest-1.8. * gnu/packages/parallel.scm (cpuinfo) [inputs]: Replace googletest with googletest-1.13. * gnu/packages/machine-learning.scm (nnpack, python-pytorch), * gnu/packages/parallel.scm (pthreadpool) [inputs]: Replace googletest with googletest-1.12. * gnu/packages/maths.scm (fp16, fxdiv), * gnu/packages/serialization.scm (yaml-cpp), * gnu/packages/web.scm (rapidjson) [inputs]: Replace googletest with googletest-1.8. Change-Id: I310fb6785d6e19bb8dbf56c25028587573981a0e
2025-11-26gnu: python-meshio: Update to 5.3.5.Nicolas Graves
* gnu/packages/simulation.scm (python-meshio): Update to 5.3.5. [source]: Remove snippet. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-setuptools. [propagated-inputs]: Remove python-importlib-metadata. [inputs, description]: Improve style. Change-Id: I9cfe0bdbef3bbb8628e065d523dd65bf1fe388c6 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: fenics: Switch to pyproject.Nicolas Graves
* gnu/packages/simulation.scm (fenics): [build-system]: Switch to pyproject-build-system. [arguments]: Relocate field, improve style. <#:test-flags>: Use them, and skip flaky tests. [native-inputs]: Add python-setuptools. Change-Id: I85825ec6aa2a68db74cb7b5864103bbf34c33031 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: python-commonroad-route-planner: Switch to pyproject.Nicolas Graves
* gnu/packages/simulation.scm (python-commonroad-route-planner): [build-system]: Switch to pyproject-build-system. [arguments]: Improve style. <#:tests?>: Disable them. [native-inputs]: Add python-setuptools. [description]: Improve style. Change-Id: I4df18bbc6bafa2d156e8569646e6b5b1af464714 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: python-commonroad-io: Switch to pyproject.Nicolas Graves
* gnu/packages/simulation.scm (python-commonroad-io): [build-system]: Switch to pyproject-build-system. [arguments]: Improve style. <#:tests?>: Disable them. [native-inputs]: Add python-setuptools. Remove python-pytest. Change-Id: Ib678e1e41ab51dbfef75fc86dee327c721de5731 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: python-commonroad-vehicle-models: Switch to pyproject.Nicolas Graves
* gnu/packages/simulation.scm (python-commonroad-vehicle-models): [build-system]: Switch to pyproject-build-system. [arguments]: Improve style. <#:test-flags>: Ignore failing tests. [native-inputs]: Add python-matplotlib, python-pytest, python-scipy, python-setuptools. Change-Id: If774ec9d9c8185367b2e2360e60e05038b11eca6 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: python-fenics-ffc: Switch to pyproject.Nicolas Graves
* gnu/packages/simulation.scm (python-fenics-ffc): [source, arguments, description]: Improve style. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-setuptools. Change-Id: I311ee58857bb796e6cacece5408a2eb62c754a04 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: Add python-fenics-ufl-2019.Nicolas Graves
* gnu/packages/simulation.scm (python-fenics-ufl-2019): New variable. Change-Id: Ie0dccb8e5500cdaa14b6f32621ce48d1399b9979 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: python-fenics-ufl: Update to 2025.2.0.Nicolas Graves
* gnu/packages/simulation.scm (python-fenics-ufl): Update to 2025.2.0. [build-system]: Switch to pyproject-build-system. [arguments]: Drop them. [native-inputs]: Add python-setuptools. [description]: Improve style. Change-Id: I747c989bd6dbcfa034182523ec6be7976d7f3f33 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-26gnu: open-simulation-interface: Switch to pyproject.Nicolas Graves
* gnu/packages/simulation.scm (open-simulation-interface): [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-pytest, python-setuptools. Change-Id: Ie27bdc726ee7a943cdb7a59b86595853e78a575e Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-10-29Revert "gnu: python-fenics-ufl: Update to 2025.1.0."Andreas Enge
This reverts commit 5c522a1abff0b60d3a3d526605ef41bbf354162e. The update breaks depending packages.
2025-10-22gnu: Remove openfoam.Andreas Enge
* gnu/packages/simulation.scm (openfoam): Delete variable. Change-Id: I7a15a430e76484ce8e157b55fa90ce271b9372ee
2025-09-18Reapply "Update Maxim's email address."Maxim Cournoyer
This reverts commit a7db92d9b389cbe565395523882c34c6eff2c21a, this time with the more careful command, to avoid a world rebuild: grep -rl --exclude-dir=build --exclude-dir=patches --exclude=ld-wrapper.in \ --exclude=sitecustomize.py --exclude=guix-emacs.el maxim.cournoyer@gmail.com | xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g' Change-Id: I0871f5cf9ace79e34e78e24154d0da6ea95a3a91
2025-09-18Revert "Update Maxim's email address."Maxim Cournoyer
This reverts commit d0d87a744d724b7e7d5ac013c586039652087bb3. Oops! This caused a world rebuild. Change-Id: I25fff644b2b61d0ee93d69b457b04c72b5b74d15
2025-09-18Update Maxim's email address.Maxim Cournoyer
The change was automated via: git grep -l maxim.cournoyer@gmail.com | xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g' * .mailmap: New entry. Change-Id: Iaa88b1e51c94159c49138fb43910badb990eb169
2025-08-26gnu: python-fenics-ufl: Update to 2025.1.0.Nicolas Graves
* gnu/packages/simulation.scm (python-fenics-ufl): Update to 2025.1.0. [source]: Switch to git-fetch. [build-system]: Switch to pyproject-build-system. [arguments]: Remove them. [native-inputs]: Add python-setuptools, python-wheel. [home-page, description]: Update. Signed-off-by: jgart <jgart@dismail.de>
2025-08-25gnu: paraview: Update to 6.0.0.Jake Forster
* gnu/packages/image-processing.scm (paraview): Update to 6.0.0. [source]<snippet>: Update list of bundled VTK libraries in comments. glew is no longer bundled so do not remove it. [arguments]<#:configure-flags>: Use a relative directory in "CMAKE_INSTALL_DOCDIR" and "PARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY". Remove "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON". [inputs]: Replace fmt with fmt-11. Remove glew. * gnu/packages/simulation.scm (openfoam-org)[native-inputs]: Replace fmt with fmt-11. Remove glew. Change-Id: Ifa005f33dd04c0119008726c11f3b32efba28b0d Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2025-08-22gnu: fenics-dolfin: Remove support for SUNDIALS.Paul Garlick
The dolfin interface to sundials requires a header file 'cvode_impl.h' which is not available in sundials v>5.4.0. * gnu/packages/simulation.scm (fenics-dolfin) [inputs]: Remove SUNDIALS-OPENMPI. [arguments]<#:configure-flags>: Disable SUNDIALS feature. <#:phases>: Do not set SUNDIALS_DIR variable. Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-07-28gnu: fenics-dolfin: Fix build with gcc@14.Paul Garlick
* gnu/packages/patches/fenics-dolfin-integer-types.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register new patch. * gnu/packages/simulation.scm (fenics-dolfin)[source]: Use new patch. Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-07-21gnu: qtxmlpatterns: Rename to qtxmlpatterns-5.宋文武
* gnu/packages/qt.scm (qtxmlpatterns): Rename to qtxmlpatterns-5. (qtspeech-5) [native-inputs]: Adjust accordingly. (python-pyqt) [inputs]: Likewise. (python-shiboken-2) [inputs]: Likewise. (python-pyside-2) [inputs]: Likewise. * gnu/packages/animation.scm (pencil2d) [inputs]: Likewise. * gnu/packages/education.scm (openboard) [inputs]: Likewise. (ktouch) [inputs]: Likewise. * gnu/packages/engineering.scm (freecad) [inputs]: Likewise. * gnu/packages/finance.scm (monero-gui) [inputs]: Likewise. * gnu/packages/geo.scm (gplates) [inputs]: Likewise. * gnu/packages/image-processing.scm (paraview) [inputs]: Likewise. * gnu/packages/kde-frameworks.scm (ktexteditor-5) [inputs]: Likewise. (ksyntaxhighlighting-5) [native-inputs]: Likewise. * gnu/packages/messaging.scm (kaidan) [inputs]: Likewise. * gnu/packages/music.scm (hydrogen) [inputs]: Likewise. * gnu/packages/simulation.scm (openfoam-org) [inputs]: Likewise. Change-Id: Ic260988913600dee261bd138efc6a830bc45d057 Signed-off-by: Zheng Junjie <z572@z572.online>
2025-07-10gnu: python-dolfin-adjoint: Fix build.Paul Garlick
* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix build. [arguments]: Set pytest import mode. Update list of failing tests. [native-inputs]: Add python-setuptools and python-wheel, needed by pyproject-build-system. Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-07-05gnu: fenics: Fix build.Paul Garlick
* gnu/packages/simulation.scm (fenics): Run guix style, improve formatting. [arguments] <phases>: Remove test module references to expired numpy aliases in the 'pre-check' phase. Use '--deselect' instead of '--ignore' to skip a test in the 'check' phase. Add a FIXME note to enable reading and writing files in the binary HDF5 format. Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-06-28gnu:fenics-dolfin: Fix build with hdf5@1.14.Paul Garlick
* gnu/packages/patches/fenics-dolfin-hdf5-version-check.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register new patch. * gnu/packages/simulation.scm (fenics-dolfin): Run guix style. [source]: Use new patch. [arguments] <phases>: Update 'pre-check' comment. Add 'demo_stokes-iterative_mpi' test to list of skipped tests. Change-Id: I8ec4534d96af6726fcfd3a601d34b109d06c4ca6 Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-03-23gnu: python-fenics-fiat: Refresh package, fix build.Sharlatan Hellseher
This package is quite dated and upstream no longer maintains it: "This repository was archived by the owner on Feb 21, 2022. It is now read-only." <https://bitbucket.org/fenics-project/fiat> -> <https://github.com/FEniCS/fiat> while providing a new refactored fork <https://github.com/firedrakeproject/fiat>. * gnu/packages/simulation.scm (python-fenics-fiat) [build-system]: Swap to pyproject-build-system. [arguments] <test-flags>: Move tests skip logic here. <phases>: Use default 'check. [native-inputs]: Add python-setuptools and python-wheel. [description]: Adjust fill column indentation. Change-Id: Ifea4430b1e49491f1b145702ec6df58153a9c809
2025-01-27gnu: python-fenics-dijitso: Fix build.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-fenics-dijitso): Improve style, fix build, use G-Expressions. [phases] {check}: Respect tests? flag. [native-inputs]: Add python-pytest-cov. Change-Id: I4032735228d36366a7014b48e9d21606628c56a6
2024-12-13gnu: build-system/pyproject: Add missing native-inputs.Nicolas Graves
* gnu/packages/bioinformatics.scm (python-ega-download-client) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/databases.scm (datasette)[native-inputs]: Add python-pip. * gnu/packages/django.scm (python-django-localflavor, python-django-contact-form)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/graphviz.scm (python-uqbar)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/jupyter.scm (python-jupyterlab-server)[native-inputs]: Add python-wheel. (python-nbstripout)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/machine-learning.scm (python-captum, python-linear-operator, python-gpytorch)[native-inputs]: Add python-setuptools. * gnu/packages/music.scm (abjad, abjad-ext-rmarkers, abjed-ext-nauert, python-mutagen)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/package-management.scm (python-conda-package-handling)[native-inputs]: Add python-setuptools and python-wheel. (conda)[native-inputs]: Add python-wheel. * gnu/packages/python-check.scm (python-pyinstrument, python-pytest-testmon, python-pytest-trio, python-nbval, python-pytest-toolbox)[native-inputs]: Add python-setuptools and python-wheel. (python-nptyping)[native-inputs]: Add python-setuptools. * gnu/packages/python-check.scm (python-dask-expr)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-web.scm (parfive, python-aioftp, python-hupper, python-sanic, python-mechanicalsoup, python-tinycss, python-aiostream, python-cbor2, gunicorn)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/python-xyz.scm (python-apprise, python-jaraco-classes, python-sparse, python-shtab, python-pyan3)[native-inputs]: Add python-setuptools. (python-jupytext, python-orderedmultidict, python-identify, python-nodeenv, python-cfgv, python-zarr, python-multipart, python-nbconvert, python-cram, python-immutables, python-numpydoc, python-cairosvg, python-unidecode, python-black, python-multidict, python-mpv-jsonipc, python-humanize, python-cmd2)[native-inputs]: Add python-setuptools and python-wheel. (python-partd, python-dask, python-zarr)[native-inputs]: Add python-wheel. (python-nbconvert)[propagated-inputs]: Add texlive-etoolbox. Remove duplicate textlive-jknapltx. (python-isort)[native-inputs]: Add python-pip. * gnu/packages/simulation.scm (python-fenics-dijitso)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/sphinx.scm (python-pydata-sphinx-theme, python-sphinx-autodoc-typehints)[native-inputs]: Add python-setuptools. * gnu/packages/syndication.scm (tuir)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/terminals.scm (python-halo)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/time.scm (python-arrow, python-dateutil) [native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/version-control.scm (pre-commit)[native-inputs]: Add python-setuptools and python-wheel. Remove input labels. * gnu/packages/virtualization.scm (python-qemu-qmp, python-transient)[native-inputs]: Add python-setuptools and python-wheel. * gnu/packages/xorg.scm (python-xcffib)[native-inputs]: Add python-setuptools and python-wheel. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Change-Id: Id61cf8cdc47bd4c2871c0a9c8e9a5bfd51157df0
2024-12-13gnu: python-fenics-dijitso: Move to pyproject-build-system.Nicolas Graves
* gnu/packages/simulation.scm (python-fenics-dijitso): [build-system]: Move to pyproject-build-system. [arguments]<#:phases>: Rewrite check phase replacement to care about .guix-pytest. Change-Id: I3383f4078fbb0100e6d8257d7d84785b953ab0cf Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2024-12-10gnu: Fix synopsis in various python packages.Gabriel Wicki
* gnu/packages/python-compression.scm (python-inflate64): Fix synopsis. * gnu/packages/python-science.scm (python-xarray-dataclasses): Fix synopsis. * gnu/packages/python-web.scm (python-waybackpack): Fix synopsis. * gnu/packages/python-xyz.scm (python-mir-eval): Fix synopsis. (python-restructuredtext-lint): Fix synopsis. (python-pixelmatch): Fix synopsis. (python-google-pasta): Fix synopsis. (python-xmp-toolkit): Fix synopsis. * gnu/packages/bioinformatics.scm (python-mgatk): Fix synopsis. * gnu/packages/rpc.scm (python-grpc-stubs): Fix synopsis. * gnu/packages/simulation.scm (python-commonroad-io): Fix synopsis. Signed-off-by: Vagrant Cascadian <vagrant@debian.org>
2024-07-11gnu: packages/simulation: Add self to copyright header.Sharlatan Hellseher
* gnu/packages/simulation.scm: Add Sharlatan Hellseher <sharlatanus@gmail.com> to copyright header. Change-Id: I18e82c7344cfa206ff8f82dfa963b7d8b026dcf0
2024-07-11gnu: python-dolfin-adjoint: Disable failing tests, fix build.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-dolfin-adjoint) [arguments]: <#:test-flags>: Explicitly ignore failing tests during collection phase and some tests during runt test phase. <#:phases>: Change HOME env to GETCWD in 'set-environment-variable phase. Change-Id: Ibee5e45052a3828b4522752a87c97367d7caec65
2024-07-11gnu: python-dolfin-adjoint: Swap to pyproject-build-system.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-dolfin-adjoint) [source]: Remove trailing #t from snippet. [build-system]: Swap to pyproject-build-system. [arguments]: Apply G-expressions. <#:phases>: Swap back to defaul 'check phase. python-dolfin-adjoint Change-Id: Idf100b718b44d9d6695e598c434fbbac55a38845
2024-07-11gnu: python-dolfin-adjoint: Adjust package style.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-dolfin-adjoint): Move inputs after arguments. [description]: Place it on a new line, fix indentation. Change-Id: I3d971e48b4072258ed0b41af5c202e64af9de8f3
2024-07-11gnu: python-dolfin-adjoint: Fix indentation.Sharlatan Hellseher
* gnu/packages/simulation.scm (python-dolfin-adjoint): Fix indentation. Change-Id: I457639a98f1ae49d43042e557352d390afc9419d
generated by cgit v1.3 (git 2.53.0) at 2026-05-27 19:23:32 +0000