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2026-01-25gnu: python-pythran: Clean up artifacts.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pythran): Adjust style and remove unused parts. [source] <url>: Use a direct URL string. [arguments] <test-flags, phase:pre-check>: Drop them as not used. [native-inputs]: Remove openblas, python-pytest, python-pytest-xdist, and python-wheel. [home-page]: Move above [synopsis]. Change-Id: I7708981548ce68351c00fbf4e8f8e806a18f798a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-asap3: Update to 3.13.10.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-asap3): Update to 3.13.10. [arguments] <tests?>: Enable. [native-inputs]: Add python-pytest. Change-Id: I166dfaf5f07f23d2d835d70f460cfa5f3f31ddb9 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ase: Update to 3.26.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-ase): Update to 3.26.0. [arguments] <test-flags>: Run tests in parallel up to 8 threads. [native-inputs]: Remove python-wheel. Change-Id: Ib2e5c9751f6c3358bb35084076f79586473da88f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-numdifftools: Update to 0.9.42.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numdifftools): Update to 0.9.42. [arguments] <test-flags>: Keep only exclusion markers. <phases>: Remove 'relax-requirements; add 'fix-pytest-config. [propagated-inputs]: Add python-matplotlib. [native-inputs]: Remove python-setuptools, python-setuptools-scm, and python-wheel; add python-pdm-backend. Change-Id: I87bdd34812df8771f53dd2ab8cfc4634ffb0b07d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-modin: Update to 0.37.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-modin): Update to 0.37.1. [arguments] <test-flags>: Rework options. <phases>: Remove 'loosen-requirements; add 'versioneer, and 'fix-pytest-config; rework {check} phase to include some API tests scenarios. [propagated-inputs]: Remove python-cloudpickle and python-s3fs; add python-fsspec, python-psutil, and python-typing-extensions. [native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib, python-msgpack, python-openpyxl, python-psutil, python-pyarrow, python-pytest-benchmark, python-pytest-cov, python-scipy, python-sqlalchemy, python-tables, python-tqdm, python-xarray, python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and python-versioneer. Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-xarray-einstats: Update to 0.9.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.9.1. [propagated-inputs]: Add python-einops and python-numba. [native-inputs]: Remove python-einops and python-numba. Change-Id: Ic3e05114dc3d6343523aec222f527ef9653ed2d6 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-dask-image: Update to 2025.11.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-dask-image): Update to 2025.11.0. [arguments] <test-flags>: All tests passed. <phases>: Add 'fix-pytest-config; rework 'set-version to read from envar. [propagated-inputs]: Remove python-tifffile-for-dask-image; add python-tifffile. [native-inputs]: Remove python-setuptools-scm; add python-setuptools-scm-next. * gnu/packages/python-xyz.scm (python-tifffile-for-dask-image): Delete variable. Change-Id: I928c39c848f3a20d5eb51d10e4c8374891b8f0b0 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-xarray: Update to 2025.12.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-xarray): Update to 2025.12.0. [arguments] <test-flags> Rework skipped tests, do not depend on MyPy type checker. [native-inputs]: Remove python-wheel; add python-pytest-asyncio. Change-Id: I49e33b614926cde8bd5fad09ac278bc79e9d3cb1 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-jacobi: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-jacobi)[arguments]<phases>: Add 'fix-pytest-config. Change-Id: Ia8b4c30d2d8d6cfe9bae79342614747c90ae6735 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scikit-image-next: Deprecate by python-scikit-image.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-image-next): Deprecate in favor of python-scikit-image. Change-Id: I006f4a302eabab82abd9c853f1b6a3d352f546ef Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scikit-image: Update to 0.25.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-image): Update to 0.25.2. [arguments] <test-flags>: Ignore benchmark tests. <phases>: Remove 'change-home-dir, 'pre-check, 'post-check; add 'remove-local-source. [propagated-inputs]: Remove python-cloudpickle, python-dask, python-matplotlib, python-pythran, and python-pywavelets; add python-packaging. [native-inputs]: Remove python-numpydoc, python-packaging, and python-wheel; add python-pythran. Change-Id: Ifbfbb3e2d28dc8784f600a4cd1a0f0c7129fddb5 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fgivenx): Update towcf51dbf8b7efdd8d84f055740a069a5b882dcf77. [source]: Switch to git-fetch providing comparability with recent matblotlib version. [arguments]: Drop all. [home-page]: Fix URL https://github.com/fgivenx/fgivenx responding with 404, new one is taken from PyPI page. Change-Id: Ia255f4b44967ee32e9b4a18cc15b80aa4cf0b09e Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-algopy: Update to 0.7.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-algopy): Update to 0.7.2. [native-inputs]: Remove python-wheel. Change-Id: Ifac98dffd209bea3d50ef3ded0a0aee0a24faa8c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ndindex: Update to 1.10.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-ndindex): Update to 1.10.1. [arguments] <test-flags>: Provide option to run tests again installed module. <phases>: Add 'remove-local-source. [native-inputs]: Remove python-wheel; add python-sympy. Change-Id: I2c7129b540c5fc4e25dac8945c38359cc6c71eac Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-distributed: Update to 2025.11.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-distributed): Update to 2025.11.0. [arguments] <tests?, test-flags>: Disable for now. <phases>: Remove 'versioneer, 'fix-references, and 'pre-check. [propagated-inputs]: Remove python-cryptography, python-dask-expr, and python-setuptools; add python-jinja2, python-locket, and python-packaging. [native-inputs]: Remove python-flaky, python-importlib-metadata, python-pytest, python-pytest-timeout, python-versioneer, and python-wheel; add python-setuptools and python-setuptools-scm-next. Change-Id: I1c368ee626d4bc5dc206df06431d164cd8df3428 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pydantic-2: Deprecate by python-pydantic.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pydantic-2): Deprecate variable. * gnu/packages/astronomy.scm (python-czml3, python-edps, python-hvpy): [propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/cybersecurity.scm (gallia): [inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/databases.scm (python-prisma)[propagated-inputs]: Remove python-pydantic-2; add python-pydantic. (python-tortoise-orm, aerich)[native-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/django.scm (python-django-ninja)[propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/finance.scm (python-schwifty)[native-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/games.scm (tuxemon)[propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/machine-learning.scm (python-spacy, python-thinc): [propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/maths.scm (python-libensemble)[propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/protobuf.scm (python-pure-protobuf)[native-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/python-check.scm (python-inline-snapshot)[native-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/python-science.scm (python-iminuit):[native-inputs]: Remove python-pydantic-2; add python-pydantic. (python-pandera, python-vaex-core)[propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/python-web.scm: (python-cloudpathlib, python-huggingface-hub): [native-inputs]: Remove python-pydantic-2; add python-pydantic. (python-aws-sam-translator, python-weasel, python-openai, python-fastapi, python-fastapi-csrf-protect, python-fastapi-pagination-minimal, python-fastapi-pagination): [propagated-inputs]: Remove python-pydantic-2; add python-pydantic. * gnu/packages/python-xyz.scm: (python-safety-schemas, python-pytoolconfig, python-pydantic-cli, python-pydantic-settings, python-confection, python-safety)[propagated-inputs]: Remove python-pydantic-2; add python-pydantic. (python-deepdiff, python-lief)[native-inputs]: Remove python-pydantic-2; add python-pydantic. Change-Id: I20842162ae8a6c0abd54e4ef1fc676f928541184 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-dask: Update to 2025.11.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-dask): Update to 2025.11.0. [arguments] <test-flags>: Do not max out availalbe thread, keep them on 4 for stability; rework skipped/ignored tests. <phases>: Remove 'versioneer, and 'patch-pyproject. [propagated-inputs]: Remove python-dask-expr; add python-lz4 and python-pyarrow. [native-inputs]: Remove python-importlib-metadata and python-versioneer; add python-pytest-asyncio, python-pytest-mock, python-pytest-timeout, python-setuptools-scm-next, and tzdata-for-tests. Change-Id: I8234ad1923a2a228c9c240bb34c9e1c9dfcbbd55 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scipy: Update to 1.16.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scipy): Update to 1.16.3. [arguments] <test-flags>: Use Pytest directly, as seen in project's GitHub Actions. <phases>: Remove 'apply-i686-patch; add 'relax-requirements, 'hide-gfortran; rework custom 'check to run Pytest directly. [native-inputs]: Remove gcc, python-cython-0; add python-cython, and python-hypothesis. [inputs]: Remove pybind11-2.10; add boost, pybind11, qhull, and xsimd. * gnu/packages/patches/python-scipy-i686.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Deregister patch. Change-Id: Ibc38577b9b0c915e54ca3b3096727c9c2f82e19c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pandas: Update to 2.3.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandas-2): Update to 2.3.3 and rename to python-pandas. [arguments] <test-flags>: Rework skipped tests. <phases>: Remove 'pre-check, and 'patch-which; use custom 'check. [inputs]: Remove which, it's implemanted with Python's `shutil.which()'. [propagated-inputs]: Remove python-jinja2, python-matplotlib, python-openpyxl, python-xlrd, and python-xlsxwriter. [native-inputs]: Remove python-beautifulsoup4, python-cython, python-html5lib, python-matplotlib, python-openpyxl, python-pytest-localserver, and python-pytest-mock; add meson and tzdata-for-tests. (python-pandas-2): Deprecate variable in favor of python-pandas. Change-Id: Ib4aefbbc33f46f793430ac396cbe5e6c4107ec2f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2025-12-30gnu: Remove python-climin.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-climin): Delete variable. Fixes: guix/guix#4556 Change-Id: I8e26118c854a6ece21a5d8946a30812b626dc52e
2025-12-30gnu: Add python-osfclient.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-osfclient): New variable. Change-Id: I236ee7e8f56758fbd75b8b83f67161f37d812e6e
2025-12-27gnu: python-pylems: Update to v0.6.9.Aaron Covrig
* gnu/packages/python-science.scm (python-pylems): Update to v0.6.9. [source]: Switch to git-fetch. [build-system]: Switch to pyproject-build-system. [arguments]: Execute project tests. [native-inputs]: Add python-pytest and python-setuptools. [propagated-inputs]: Add python-matplotlib. [description]: Update with acronym. Closes guix/guix#5024 Change-Id: Id3e454e5ae6f4ca49fad29cd4e0238aeb75e7653 Signed-off-by: Cayetano Santos <csantosb@inventati.org>
2025-12-27gnu: python-pytensor: Simplify package.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pytensor): [arguments] <test-flags>: Let pytest discover tests. [phases]{pre-check}: Replace re-build extensions by deleting local source. [propagated-inputs]: Remove python-typing-extensions. [native-inputs]: Remove python-wheel. Change-Id: I42f97a93e1704856d29691f99414d4f2497723b9
2025-12-27python-pytensor: Skip more tests.Ghislain Vaillant
* gnu/packages/python-science.scm (python-pytensor) [arguments]<#:test-flags>: Ignore more failing tests. Change-Id: I542ba0025bf43ebef08b2ab67c19e618b3b32621 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-27gnu: python-tspex: Update to 0.6.3-0.d393ff4.Hugo Buddelmeijer
* gnu/packages/python-science.scm (python-tspex): Update to d393ff497b7c14d673e792bd6c84ddd734be1239 commit. [source]: Switch to git-fetch for tests. [build-system]: Switch to pyproject-build-system. [arguments]<#:phases>: Add 'remove-coverage and 'fix-seaborn phases. [propagated-inputs]: Add python-seaborn. [native-inputs]: Add python-pytest and python-setuptools. Change-Id: I367198165d5d78e1f1e04708272136711e5b22b5 Reviewed-by: Nicolas Graves <ngraves@ngraves.fr> Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-27gnu: python-pynrrd: Update to 1.1.3.Hugo Buddelmeijer
* gnu/packages/python-science.scm (python-pynrrd): Update to 1.1.3. [build-system]: Switch to pyproject-build-system. [propagated-inputs]: Remove python-nptyping and python-typing-extensions. [native-inputs]: Add python-pytest and python-setuptools. Change-Id: Id98a3424f35fc791324010deae357f89e2d93362 Reviewed-by: Nicolas Graves <ngraves@ngraves.fr> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-27gnu: python-simplespectral: Switch to pyproject-build-system.Hugo Buddelmeijer
* gnu/packages/python-science.scm (python-simplespectral): Switch to pyproject-build-system. [build-system]: Switch to pyproject-build-system. [arguments]<#:tests>: Set to #f, as there are no tests. [native-inputs]: Add python-setuptools. Change-Id: Ifabd9561978fec3a7380d8cdb7641732baad01d8 Reviewed-by: Nicolas Graves <ngraves@ngraves.fr> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-18Update Nguyễn Gia Phong's new email address.Nguyễn Gia Phong
* .mailmap: New entry. Change-Id: I839ba6c7be463c5b59c7e68247ae5e46d2ceeeaf Reviewed-by: Maxim Cournoyer <maxim@guixotic.coop> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-17gnu: python-numpy-groupies: Update to 0.11.3.Hugo Buddelmeijer
* gnu/packages/python-science.scm (python-numpy-groupies): Update to 0.11.3. [build-system]: Switch to pyproject-build-system. [propagated-inputs]: Add python-numpy. [native-inputs]: Remove python-pytest-runner and python-numpy; add python-pandas, python-setuptools, and python-setuptools-scm. Change-Id: Iffe9007c357ac5f299a07cfb1d3fcd20da862c81 Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-12-17gnu: python-msgpack-numpy: Switch to pyproject-build-system.Hugo Buddelmeijer
* gnu/packages/python-science.scm (python-msgpack-numpy): Switch to pyproject-build-system. [build-system]: Switch to pyproject-build-system. [arguments]<#:test-backend>: Select unittest. [native-inputs]: Add python-setuptools. Change-Id: I47958f2fe83411cefd91b664197a5b08e33205b4 Signed-off-by: Andreas Enge <andreas@enge.fr>
2025-12-03gnu: python-traittypes: Replace python-nose by python-pynose.Nicolas Graves
* gnu/packages/python-science.scm (python-traittypes)[native-inputs]: Replace python-nose by python-pynose. Remove python-wheel. Change-Id: Ia90b2d1311026af1bfee295cc5db3c0cac392932 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-12-03Update Giacomo's email address.Giacomo Leidi
The change was automated via: git grep -l goodoldpaul@autistici.org | xargs sed -i 's/goodoldpaul@autistici.org/therewasa@fishinthecalculator.me/g' * .mailmap: New entry. Change-Id: I1629388334695d221647afe6a14faf61af5fe0d6 Signed-off-by: Maxim Cournoyer <maxim@guixotic.coop>
2025-11-30gnu: python-unyt: Update to 3.0.4.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-unyt): Update to 3.0.4. [arguments]: Drop all. [propagated-inputs]: Remove python-h5py and python-matplotlib; add python-packaging. [native-inputs]: Remove python-pint and python-wheel. Change-Id: I3759ce1befbb804d1c2508df042c19082f9a7833
2025-11-30gnu: Add python-nestcheck.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-nestcheck): New variable. Change-Id: Ieb2d6942e0f8f802853f821bc13c3b86aee74a6f
2025-11-30gnu: Add python-fgivenx.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fgivenx): New variable. Change-Id: I2f3d49e5340b803616618628439df6889c86fc61
2025-11-20gnu: python-pynetdicom: Reduce closure size.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pynetdicom): [propagated-inputs]: Remove python-mypy. [native-inputs]: Remove python-codespell, python-coverage, python-pytest-cov, pythonb-pytest-xdist, python-sphinx, and python-sphinx-rtd-theme. Change-Id: Ie0fc078cec3473e061ebc4dc87de59ca309a6194
2025-11-20gnu: python-clarabel: Extend with (pyproject-guile-json).Nicolas Graves
* gnu/packages/python-xyz.scm (python-clarabel)[arguments] <#:phases>: Extend with (pyproject-guile-json). Change-Id: I258bc867cc4269779ccf886601a00323b8f80083 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-11-11gnu: python-duckdb: Move to duckdb.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-duckdb): Move from here ... * gnu/packages/duckdb.scm: ... to here. * gnu/packages/python-science.scm: Add (gnu packages duckdb). Change-Id: Ic8551cdd64f718e62a12576fbc1a38bf861d1644
2025-11-04gnu: packages/python-science: Remove package-management module.Sharlatan Hellseher
* gnu/packages/python-science.scm: Remove unused (gnu packages package-management) module. Change-Id: I6760dab3d684077f0d121c6d2591e4430205035d
2025-10-30gnu: Add python-iminuit.Vinicius Monego
* gnu/packages/python-science.scm (python-iminuit): New variable. Change-Id: I65da990dda737fd744e22d83007c736a92a8ec0a Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-10-30gnu: Add python-numba-stats.Vinicius Monego
* gnu/packages/python-science.scm (python-numba-stats): New variable. Change-Id: Iff8181ec1c9341081c09afcaf4fbdc2d57b1ccec Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-10-30gnu: Add python-jacobi.Vinicius Monego
* gnu/packages/python-science.scm (python-jacobi): New variable. Change-Id: I1db0a588789c0cb6c79d298f97b71ee7958eab39 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-10-28gnu: pyzo: Move to python-science.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (pyzo): Move from here ... * gnu/packages/python-science.scm: ... to here. Change-Id: I8b50396d0d863e1bda5d7686ae2826a3bfe544dd
2025-10-24gnu: python-cython-3: Mark as deprecated.Sharlatan Hellseher
This is a followup to 941b6ff1c11be3ba73e4e67bc661bd0eed3e9d58 commit. Replace all python-cython-3 occurrences with python-cython. * gnu/packages/python-xyz.scm (python-cython-3): Deprecate variable. * gnu/packages/algebra.scm (python-fpylll, python-flint)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/astronomy.scm (python-astropy, python-astroscrappy, python-halotools, python-healpy, python-libstempo, python-lofar-h5plot, python-losoto, python-photutils, python-pyxsim, python-regions, python-reproject, python-sncosmo, python-sndata, python-stcal, python-yt)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/bioinformatics.scm (macs-3, python-pyrodigal): [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/build-tools.scm (meson-python)[propagated-inputs]: Remove python-cython-3; add python-cython. [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/databases.scm: (python-adbc-driver-manager, python-psycopg, python-pyarrow)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/finance.scm (python-ta-lib)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/game-development.scm (python-pygame-ce)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/geo.scm (python-pyogrio, python-cf-units)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/machine-learning.scm: (python-scikit-learn, python-opentsne)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/maths.scm: (python-cylp, python-petsc4py, python-primecountpy, python-slepc4py)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-check.scm (python-line-profiler)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-compression.scm (python-blosc2)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-graphics.scm (python-vispy)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-science.scm: (python-pykdtree, python-qutip, python-scikit-misc, python-scikit-surprise, python-pandas-2, python-vaex-core)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-web.scm: (python-aiohttp, python-falcon, python-yarl, python-uvloop)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/python-xyz.scm: (python-logbook, python-netcdf4, python-pyyaml, python-propcache, python-pywavelets, python-symengine, python-cysignals, python-pyemd, python-rbfly)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/sagemath.scm: (python-cypari2, python-pplpy, sage) [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/sphinx.scm (python-sphinx)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/statistics.scm: (python-statsmodels, python-pyreadstat): [native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/tor.scm (onionshare-cli)[native-inputs]: Remove python-cython-3; add python-cython. * gnu/packages/xorg.scm (xpra)[native-inputs]: Remove python-cython-3; add python-cython. Change-Id: I38038d2ab18e6a7b549070083d6e4c5beb8b0293
2025-10-23gnu: python-pyvistaqt: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pyvistaqt)[native-inputs]: Add python-pyqt-6. Change-Id: I9c1d29224109a97db47f4ce27d7ba9a98f650625
2025-10-23gnu: python-pyqtgraph: Reduce closure size, don't propagate Qt5/Qt6.Sharlatan Hellseher
Don't propagate Qt5/Qt6 and let the user of the package to select which one is required. From project's documentation: When pyqtgraph is first imported, if the environment variable PYQTGRAPH_QT_LIB is not set, it automatically determines which library to use by making the following checks: - If PyQt6 is already imported, use that - Else, if PySide6 is already imported, use that - Else, if PyQt5 is already imported, use that - Else, if PySide2 is already imported, use that - Else, attempt to import PyQt6, PySide6, PyQt5, PySide2, in that order. See: <https://pyqtgraph.readthedocs.io/en/pyqtgraph-0.13.7/getting_started/how_to_use.html#pyqt-and-pyside>. * gnu/packages/python-science.scm (python-pyqtgraph)[arguments] <test-flags>: Run unit tests only, skip one more failing test, run in a single thread. [inputs]: Remove qtbase-5. [propagated-inputs]: Remove python-pyqt. [native-inputs]: Remove python-pytest-cov, python-pytest-xdist, and python-wheel; add python-pyqt-6 and python-pytest-qt. Change-Id: Icb272c5215215b96faad8420e1781a5e61ab838d
2025-10-21gnu: Add python-dvc-data.Janneke Nieuwenhuizen
* gnu/packages/python-science.scm (python-dvc-data): New variable. Change-Id: I4479129a1842d2133acec6f7aeb1d4a95e9e6162
2025-10-21gnu: Add python-dvc-objects.Janneke Nieuwenhuizen
* gnu/packages/python-science.scm (python-dvc-objects): New variable. Change-Id: Ibd4247ab12b161392de7d351195646f7215610bd
2025-10-21gnu: Add python-snakemake-executor-plugin-slurm.Janneke Nieuwenhuizen
* gnu/packages/python-science.scm (python-snakemake-executor-plugin-slurm): New variable. Change-Id: I7ca462dc224dc6947130fa9842f26c25cd7349a4
2025-10-21gnu: Add python-snakemake-executor-plugin-slurm-jobstep.Janneke Nieuwenhuizen
* gnu/packages/python-science.scm (python-snakemake-executor-plugin-slurm-jobstep): New variable. Change-Id: I477b8a30ae6642fa0e8d6e49a828ab0d3aa589b4
generated by cgit v1.3 (git 2.53.0) at 2026-05-28 15:47:13 +0000