| Age | Commit message (Collapse) | Author |
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* gnu/packages/jupyter.scm (python-nbclassic): Update to 1.3.3.
[propagated-inputs]: Remove python-argon2-cffi, python-jinja2,
python-jupyter-client, python-jupyter-core, python-jupyter-server,
python-nbconvert, python-nbformat, python-prometheus-client,
python-pyzmq, python-send2trash, python-terminado, python-tornado, and
python-traitlets.
[native-inputs]: Remove python-jupyter-packaging, python-pytest-cov,
python-pytest-tornasync, python-requests, python-requests-unixsocket2,
and python-testpath; add python-hatchling, python-babel, and
python-hatch-jupyter-builder.
Change-Id: I1c9691ffe980025771a219dc29faf38f0af5fd87
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This commit was made by running this command:
sed -e's/modify-inputs (package-\([a-z-]*\)inputs [a-zA-Z0-9-]\+)/modify-inputs \1inputs/g' -i gnu/packages/*.scm
… and then reverting individual hunks where the change would trigger unbound
variable warnings or other issues (such as ‘native-inputs’ is bound in the
body of the ‘inputs’ field, but it refers to the ‘native-inputs’ thunk defined
just above).
Change-Id: I6d94819f2809313fa1fbefc61897502ee7d66fab
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This commit was made by running this command:
sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm
… and then:
1. reverting changes from ‘gnu/packages/rust.scm’ and
‘gnu/packages/java.scm’ since they would incur derivation changes and/or
breakage;
2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’;
3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’,
which use ‘substitute-keyword-arguments’ for arguments that are not
inherited (and thus ‘arguments’ would be unbound);
4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’
which make bogus assumptions about inherited arguments.
Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c
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* gnu/packages/jupyter.scm (python-sparqlkernel): Delete variable.
Fixes: guix/guix#6031
Change-Id: I9bd90118efa1f6d46ac1c850ea64d209678ee752
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* gnu/packages/jupyter.scm (python-ipympl): Delete variable.
Fixes: guix/guix#5366
Change-Id: Ifeb0c906565224d5ca656e027190dbd045f2eb0f
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* gnu/packages/jupyter.scm (python-ipykernel-6): Fix build.
[native-inputs]: Remove python-pytest; add python-pytest-8.
[propagated-inputs]: Remove python-tornado-6; add python-tornado.
Fixes: guix/guix#6366
Merges: https://codeberg.org/guix/guix/pulls/6368
Change-Id: I2ccbbba6d7921a3903c5cbefe9916b2d0d77d4b6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (python-ipykernel-6, python-ipykernel-7): New
variables.
(python-ipykernel-7)
[phases]{sanity-check}: Delete for now.
[propagated-inputs]: Remove python-jupyter-client; add
python-jupyter-client-7.
[native-inputs]: Remove python-pytest-asyncio; add
python-pytest-asyncio-0.26.
(python-ipykernel): Set to python-ipykernel-6.
Fixes: guix/guix#5943
Change-Id: I5bafd9057a774d7fe31c52cd20899ddef6cd0620
Reviewed-by: Reza Housseini <reza@housseini.me>
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* gnu/packages/jupyter.scm (python-jupyter-client-7,
python-jupyter-client-8): New variables.
(python-jupyter-client): Set to python-jupyter-client-7.
Change-Id: I8868d2a40e9679ac239ee0a09b151225ec08c511
Reviewed-by: Reza Housseini <reza@housseini.me>
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* gnu/packages/python-web.scm (python-tornado): Absorb definition of
python-tornado-6.
(python-tornado-5): New variable, inherit from python-tornado.
(python-tornado-6): Deprecate variable.
* gnu/packages/jupyter.scm (python-jupyterlite-core)
* gnu/packages/jupyter.scm (python-pytest-jupyter)
* gnu/packages/jupyter.scm (python-voila)
* gnu/packages/python-xyz.scm (python-pypugjs)
* gnu/packages/python-xyz.scm (python-tenacity):
[native-inputs]: Remove python-tornado-6; add python-tornado.
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server):
[inputs]: Remove python-tornado-6; add python-tornado.
* gnu/packages/bioinformatics.scm (python-bulkvis)
* gnu/packages/jupyter.scm (python-ipykernel)
* gnu/packages/jupyter.scm (python-jupyter-client)
* gnu/packages/jupyter.scm (python-jupyter-client-7)
* gnu/packages/jupyter.scm (python-jupyter-server)
* gnu/packages/jupyter.scm (python-nbclassic)
* gnu/packages/jupyter.scm (python-nbdime)
* gnu/packages/jupyter.scm (python-notebook)
* gnu/packages/jupyter.scm (python-terminado)
* gnu/packages/python-check.scm (python-pytest-tornasync)
* gnu/packages/python-science.scm (python-distributed)
* gnu/packages/python-xyz.scm (python-bokeh)
* gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap)
* gnu/packages/python-xyz.scm (python-nbconvert)
[propagated-inputs]: Remove python-tornado-6; add python-tornado.
Change-Id: I437d73a0711c88e329666b6bc853f6332c277098
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Remove python-importlib-metadata from [native-inputs, inputs, or
propagated-inputs] in the following packages as not required for
build/tests/install:
* gnu/packages/android.scm (python-miio)
* gnu/packages/astronomy.scm (python-jwst, python-stpipe)
* gnu/packages/bioinformatics.scm (python-demuxem, python-hotspotsc,
python-weblogo, python-metacells)
* gnu/packages/calendar.scm (khal)
* gnu/packages/django.scm (python-django-q2)
* gnu/packages/engineering.scm (python-asyncua)
* gnu/packages/jupyter.scm (python-jupyterlab-server,
python-jupyterlite-core)
* gnu/packages/machine-learning.scm (python-pynndescent,
python-gymnasium)
* gnu/packages/maths.scm (python-orthopy, python-quadpy)
* gnu/packages/package-management.scm (poetry)
* gnu/packages/python-compression.scm (python-pybcj)
* gnu/packages/python-crypto.scm (python-keyring)
* gnu/packages/python-web.scm (python-jsonpickle, python-flask)
* gnu/packages/python-xyz.scm (python-jsonschema-3, python-pystitcher,
python-lsp-server, python-nbconvert, python-dns-lexicon,
python-signedjson, python-verlib2)
* gnu/packages/sphinx.scm (python-sphinx-6)
* gnu/packages/spreadsheet.scm (visidata)
Change-Id: Ifac8350aa60528dc2ccacf2570120dbcf1c74ab8
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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Remove python-coverage from [native-inputs] in the following packages as
not required for build/tests/install:
* gnu/packages/check.scm: (python-pytest-flakes)
* gnu/packages/cpp.scm: (cpplint)
* gnu/packages/jupyter.scm: (python-nbclassic)
* gnu/packages/machine-learning.scm (onnx,
python-pytorch-lightning) (python-torchmetrics)
* gnu/packages/openstack.scm: (python-hacking)
* gnu/packages/python-xyz.scm: (python-lsp-jsonrpc, python-nodeenv)
* gnu/packages/simulation.scm: (python-dolfin-adjoint)
* gnu/packages/version-control.scm: (pre-commit)
Change-Id: I2c5e14f4aa28906ceee054c857e6abeeb122ad52
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (python-ipydatawidgets):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:phases>: Migrate 'check phase replacement to <#:test-flags>.
Use 'build and 'install phases from the python-build-system, as it
currently fails for the pyproject-build-system.
[native-inputs]: Add python-setuptools.
Fixes: guix/guix#5524
Change-Id: I410c5fa6ba4cc95bae2e5ace227a4ad07ebc118b
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (jupyter):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve comment and style.
[native-inputs]: Add python-setuptools.
Change-Id: I6056c60a1ddb822b9b80bee606add58420246c4e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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The most of the native inputs were there to tests ignored tests, they
are removed now to reduce closure size.
* gnu/packages/jupyter.scm (python-papermill):
[arguments] <test-flags>: Skip 2 failing tests.
[native-inputs]: Remove python-boto3, python-botocore, python-ipython,
python-ipywidgets, python-moto, and python-requests.
Change-Id: I4c07a024a9514a44b5819196754e44ee86d47883
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-jupyterlab-widgets): Update to 3.0.12.
Change-Id: I934b1f4d3a9458821fbdcffb96ec663c7d315131
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-notebook)[arguments] <test-flags>:
Skip one test.
[propagated-inputs]: Swap python-jupyter-client@8 with
python-jupyter-client@7.
Change-Id: I37b420120395924c524f1936723e2a2c6228761d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-jupyter-client-7): New variable.
Change-Id: I6164464161b0725d97c8eaf6ac1b46b03b1f13e3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-console): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: I687d44df58fab4d62a3eac92f2dab1eebdc89921
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-ipykernel): Update to 7.1.0.
Remove artifacts.
[arguments] <modules>: Drop them as not required.
<test-flags>: Skip just one shaky test.
<phases>: Remove 'relax-a-bit, and 'hide-deprecation-warnings; add
'fix-pytest-config.
Change-Id: I49512675b1d2f4ab1e74ec02aab92ae6673016b2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-jupyter-client): Update to 8.7.0.
[inputs]: Add net-tools and openssh.
[propagated-inputs]: Remove python-entrypoints and python-nest-asyncio.
[native-inputs]: Remove python-pytest-asyncio, python-async-generator, and
python-ipython; add python-anyio and python-pytest-jupyter-minimal.
Change-Id: I0c058aa67c6fcb71c5fcfaca34c72a15d132b0ee
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-pytest-jupyter-minimal): New variable.
Change-Id: I0192ea6c58702664651fe838c5f38a82a5fad6d2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-client,
python-jupyter-client-bootstrap): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: I036632e68c808877de14da7f91863be50cdafd61
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-jupyter-core): Update to 5.9.1.
[arguments] <tests-flags>: Rework skipped tests.
[phases]{disable-migration}: Rewrite "touch" with Guile.
[native-inputs]: Remove python-pytest-timeout.
Change-Id: I1b272eafeac129af05fd1c92f4ec72bb73be17f9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-core): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: Id577b47b0a6c9a8754e6dc4f07e5ac8ba4ea106d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/jupyter.scm (python-jupytext)
[arguments]<#:tests-flags>: Deselect additional test.
Change-Id: Ic65500b6e5d9da2644bdbb16c6ceae0e573a7936
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* gnu/packages/jupyter.scm (python-bash-kernel): Fix propagated-inputs.
[inputs]: Remove python-filetype, python-pexpect, python-ipykernel, and
python-jupyter-client.
[propagated-inputs]: Add python-filetype, python-ipykernel,
python-jupyter-client, and python-pexpect.
Merges guix/guix!5422
Change-Id: I4e1f9bc86063b04d8165d1517e4f59cc715e996e
Signed-off-by: Cayetano Santos <csantosb@inventati.org>
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* gnu/packages/python-xyz.scm (python-jupytext): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: I02697361195c0bada08122cecb2dfb16598595cd
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* gnu/packages/jupyter.scm (python-jupyter-packaging):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Replace 'check phase with a 'configure-tests phase.
[native-inputs]: Add python-setuptools. Remove python-coverage and
python-pytest-cov.
Change-Id: Ic0d18a42290ba29f88289bcdd8435c0aefb42d80
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (python-sparqlkernel):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Relocate phase 'install-kernelspec.
[native-inputs]: Add python-setuptools.
[description]: Improve style.
Change-Id: I2b65b4e23f212ef654d0efcb9a8a2e28bed343e1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (python-bash-kernel): Update to 0.10.0.
[build-system]: Switch to pyproject-build-system.
[arguments]: Refresh style.
[native-inputs]: Add python-flit-core.
[inputs]: Add python-filetype.
Change-Id: I4c1518a40c5cff7213697e357d0517f624d0e9eb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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This is a development-only input.
* gnu/packages/jupyter.scm (repo2docker)[native-inputs]:
Remove python-sphinx-autobuild.
Change-Id: I9d1596214bf93d57e1e7622ec05bf8e818722e9d
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (repo2docker)
[arguments]<#:test-flags>: Disable failing tests.
<#:phases>: Add 'patch-bash-for-tests phase.
[native-inputs]: Add python-pytest, python-requests-mock.
Change-Id: I73d72d9a8ad18386cc8aeff42f2052c20510028f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (python-qtconsole): Update to 5.7.0.
[propagated-inputs]: Add python-ipython-pygments-lexers.
[native-inputs]: Remove python-pyqt and python-wheel; add python-pyqt-6 and
python-pytest-asyncio.
Change-Id: Ieec6d1fca0001bc4bede7b0ef5c9b0981e9a0901
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* gnu/packages/jupyter.scm (python-hatch-jupyter-builder):
[native-inputs]: Remove python-pytest-cov and python-twine.
Change-Id: I8889de1b3015c03c5f03cd3c2233007fdb97b7fb
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* gnu/packages/jupyter.scm (python-nbdime): Update to 4.0.2.
[buld-system]: Switch to pyproject-build-system.
[arguments] <phases>: Remove 'remove-ipython-genutils; add 'pre-check.
[native-inputs]: Remove python-jupyter-server, python-notebook, and
python-tabulate; add git-minimal/pinned, python-hatch-jupyter-builder,
and python-hatchling.
Change-Id: I6ccf935093b07c6aa2646d0cb9b0d58b0b2991b9
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* gnu/packages/jupyter.scm (python-papermill)[native-inputs]: Remove
python-black, python-bumpversion, python-check-manifest,
python-codecov, python-coverage, python-pytest-cov, python-tox,
python-twine and python-wheel.
[source]: Switch to git-fetch.
Change-Id: Ibe48a8b34a007a21c3d94f290334d8c3f0e462b0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
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* gnu/packages/jupyter.scm (python-jupyter-lsp): Update to 2.3.0. Use
G-expressions.
[source] <uri>: Fix name as per PyPI archive.
[arguments] <test-flags>: Skip some tests.
[native-inputs]: Remove python-wheel; add python-pytest-asyncio.
Change-Id: Iece3586280f61aaad0c0b7821a6d90580c962cc5
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* gnu/packages/jupyter.scm (python-jupyterlab-widgets): Update to 3.0.11.
Change-Id: Ic401e3e56e8fe100d6b8be4eb6a5afecfd33c0ae
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* gnu/packages/python-web.scm (python-terminado): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: I54c385f4b4bb9fe58a0c0784e6994dc76fa6c8d5
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* gnu/packages/jupyter.scm (repo2docker): Update to 2024.07.0.
Change-Id: I5c0bea8245b6072b85c5c3cb901a8c6c86056276
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* gnu/packages/jupyter.scm (python-jupyterlab-pygments)
[build-system]: Use pyproject.
[native-inputs]: Add python-setuptools.
Change-Id: Ia507908434a215d933c6525430a870bdf2f6e3bc
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This reverts commit a7db92d9b389cbe565395523882c34c6eff2c21a, this time with
the more careful command, to avoid a world rebuild:
grep -rl --exclude-dir=build --exclude-dir=patches --exclude=ld-wrapper.in \
--exclude=sitecustomize.py --exclude=guix-emacs.el maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
Change-Id: I0871f5cf9ace79e34e78e24154d0da6ea95a3a91
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This reverts commit d0d87a744d724b7e7d5ac013c586039652087bb3. Oops! This
caused a world rebuild.
Change-Id: I25fff644b2b61d0ee93d69b457b04c72b5b74d15
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The change was automated via:
git grep -l maxim.cournoyer@gmail.com |
xargs sed -i 's/maxim.cournoyer@gmail.com/maxim@guixotic.coop/g'
* .mailmap: New entry.
Change-Id: Iaa88b1e51c94159c49138fb43910badb990eb169
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* gnu/packages/assembly.scm (cpu-features),
* gnu/packages/astronomy.scm (casacore),
* gnu/packages/bioinformatics.scm (morpheus),
* gnu/packages/code.scm (rtags),
* gnu/packages/education.scm (gcompris-qt),
* gnu/packages/game-development.scm (libccd),
* gnu/packages/geo.scm (cloudcompare),
* gnu/packages/glib.scm (dbus-cxx),
* gnu/packages/graph.scm (faiss),
* gnu/packages/graphics.scm (f3d, mmg),
* gnu/packages/i2p.scm (i2pd),
* gnu/packages/image-processing.scm (vtk),
* gnu/packages/image.scm (openjpeg),
* gnu/packages/irc.scm (quassel),
* gnu/packages/jami.scm (jami),
* gnu/packages/kde.scm (kapptemplate, kdeconnect, kdenlive, krita),
* gnu/packages/kde-frameworks.scm (purpose, purpose-5),
* gnu/packages/kde-office.scm (calligra, ghostwriter),
* gnu/packages/linux.scm (bpftrace),
* gnu/packages/maths.scm (blitz, double-conversion, hpcombi, lapack,
vc),
* gnu/packages/messaging.scm (libsignal-protocol-c),
* gnu/packages/mold.scm (mold),
* gnu/packages/music.scm (sonivox),
* gnu/packages/networking.scm (dhtnet),
* gnu/packages/opencl.scm (opencl-clhpp),
* gnu/packages/openpgp.scm (rnp),
* gnu/packages/photo.scm (darktable),
* gnu/packages/popt.scm (gflags),
* gnu/packages/rdesktop.scm (freerdp),
* gnu/packages/security-token.scm (cppcodec),
* gnu/packages/terminals.scm (libtsm),
* gnu/packages/text-editors.scm (jucipp),
* gnu/packages/xdisorg.scm (xsettingsd)
[arguments]<#:configure-flags>: Remove BUILD_TESTING.
* gnu/packages/jupyter.scm (xeus)
[arguments]: Disable tests.
<#:configure-flags>: Remove BUILD_TESTING.
Change-Id: I6870720cdd2b10c7afacf0c6e7400cd1d73a1209
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See <https://issues.guix.gnu.org/78055>.
* gnu/packages/jupyter.scm (python-jupyter-protocol): Delete variable.
Change-Id: Ie63efb0c2854139161813769829599afcbd03d9d
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See <https://issues.guix.gnu.org/78055>.
* gnu/packages/jupyter.scm (python-jupyter-kernel-mgmt): Delete variable.
Change-Id: I26660a1e4f32f7e84e253493973bd1c558b98e10
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* gnu/packages/python-xyz.scm (python-ipykernel): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
* gnu/packages/engineering.scm: Add jupyter module.
Change-Id: Ia1391007cd4be997aeb5c8197d4894c32340198a
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* gnu/packages/python-xyz.scm (jupyter): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
* gnu/packages/package-management.scm: Add jupyter module.
* gnu/packages/cran.scm: Likewise.
Change-Id: I357b4e96462e3ef6815bdcafd151bd56f298f8ac
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* gnu/packages/python-xyz.scm (python-notebook): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
* gnu/packages/sagemath.scm: Add jupyter module.
Change-Id: I44aca3a14573b7700cdedeaae5e05b11ad48371c
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