diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 0 insertions, 33 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ca7c06121e8..ec5af920058 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8461,39 +8461,6 @@ reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.") (license license:gpl2+))) -(define-public fastx-toolkit - (package - (name "fastx-toolkit") - (version "0.0.14") - (source (origin - (method url-fetch) - (uri - (string-append - "https://github.com/agordon/fastx_toolkit/releases/download/" - version "/fastx_toolkit-" version ".tar.bz2")) - (sha256 - (base32 - "01jqzw386873sr0pjp1wr4rn8fsga2vxs1qfmicvx1pjr72007wy")))) - (build-system gnu-build-system) - (inputs - (list libgtextutils)) - (native-inputs - (list gcc-6 ;; doesn't build with later versions - pkg-config)) - (home-page "http://hannonlab.cshl.edu/fastx_toolkit/") - (synopsis "Tools for FASTA/FASTQ file preprocessing") - (description - "The FASTX-Toolkit is a collection of command line tools for Short-Reads -FASTA/FASTQ files preprocessing. - -Next-Generation sequencing machines usually produce FASTA or FASTQ files, -containing multiple short-reads sequences. The main processing of such -FASTA/FASTQ files is mapping the sequences to reference genomes. However, it -is sometimes more productive to preprocess the files before mapping the -sequences to the genome---manipulating the sequences to produce better mapping -results. The FASTX-Toolkit tools perform some of these preprocessing tasks.") - (license license:agpl3+))) - (define-public flash (package (name "flash") |