diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 32841dc144c..0e9c9f5fe43 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12813,6 +12813,43 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-genenmf + (let ((commit "7ac475261123232d3e691ef851936e05055becd4") + (revision "1")) + (package + (name "r-genenmf") + (version (git-version "0.9.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/carmonalab/GeneNMF") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0kv419nyyddpj2j2dvhxhwk5m26p39f3jc2r7rz98j86x6hgwgpl")))) + (properties `((upstream-name . "GeneNMF"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster + r-colorspace + r-dendextend + r-irlba + r-lsa + r-matrix + r-pheatmap + r-rcppml + r-seurat + r-viridis)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/carmonalab/GeneNMF") + (synopsis "Non-Negative matrix factorization for single-cell omics") + (description + "This package provides a collection of methods to extract gene programs +from single-cell gene expression data using @dfn{non-negative matrix +factorization} (NMF). @code{GeneNMF} contains functions to directly interact +with the Seurat toolkit and derive interpretable gene program signatures.") + (license license:gpl3)))) + (define-public r-ggexpress (let ((commit "82f169385f87af328ff971195c2f64ff3c573a8a") (revision "1")) |