diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 26 insertions, 15 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b249abb2d99..55087ed54ae 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -24054,24 +24054,35 @@ parser for Python.") (define-public nanosv (package - (name "nanosv") - (version "1.2.4") - (source (origin - (method url-fetch) - (uri (pypi-uri "NanoSV" version)) - (sha256 - (base32 - "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg")))) - (build-system python-build-system) - (inputs - (list python-configparser python-pysam python-pyvcf3)) - (home-page "https://github.com/mroosmalen/nanosv") - (synopsis "Structural variation detection tool for Oxford Nanopore data") - (description "NanoSV is a software package that can be used to identify + (name "nanosv") + (version "1.2.4") + (source + (origin + (method url-fetch) + (uri (pypi-uri "NanoSV" version)) + (sha256 + (base32 "1wl2daj0bwrl8fx5xi8j8hfs3mp3vg3qycy66538n032v1qkc6xg")))) + (build-system pyproject-build-system) + (arguments + (list + #:tests? #f ; No tests upstream, even in git. + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("'pyvcf'") + "'pyvcf3'"))))))) + (native-inputs (list python-setuptools python-wheel)) + (inputs (list python-configparser python-pysam python-pyvcf3)) + (home-page "https://github.com/mroosmalen/nanosv") + (synopsis "Structural variation detection tool for Oxford Nanopore data") + (description + "NanoSV is a software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers.") - (license license:expat))) + (license license:expat))) (define-public python-strawc (package |