diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 56 |
1 files changed, 34 insertions, 22 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index eba573fe35e..1b3d0a8aa67 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -6428,37 +6428,49 @@ fi" (define-public python-brian2 (package (name "python-brian2") - (version "2.5.1") + (version "2.10.1") (source (origin (method url-fetch) - (uri (pypi-uri "Brian2" version)) + (uri (pypi-uri "brian2" version)) (sha256 (base32 - "1g48hzn3cdsvfjgz64s3kvh5d5287ggjxdyacb7wh2n5nd5iqlf7")))) + "0kqvw716q26liifjds807nxz17xbzrqwhvyp34j3d4i115xivln1")))) (build-system pyproject-build-system) (arguments (list + ;; tests: 104 passed, 2 skipped, 16 warnings + #:test-flags + ;; Tests hang during collection with higher number of threads. + #~(list "--numprocesses" (number->string (min 8 (parallel-job-count))) + ;; XXX: The complete test suite is massive, run a simple test + ;; that uses the main simulation elements and force code + ;; generation to use Cython. + "tests/test_synapses.py") #:phases #~(modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - (when tests? - (setenv "HOME" "/tmp") - ;; Must be run in a different directory, otherwise compiled - ;; modules are not found. - (with-directory-excursion "/tmp" - ;; Invoking brian2.test() is preferred to running pytest. - (invoke "python" "-c" - "import brian2, sys; sys.exit(0 if brian2.test() else 1)")))))))) - (propagated-inputs (list python-cython ; Required by codegen. - python-jinja2 - python-numpy - python-py-cpuinfo - python-pyparsing - ;; Required by codegen. - python-setuptools - python-sympy)) - (native-inputs (list python-pytest python-pytest-xdist python-wheel)) + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "pyproject.toml" + ;; 'cython>=0.29.21,<3.1.4', + ((">=0.29.21,<3.1.4") "")))) + (add-before 'check 'pre-check + (lambda _ + (setenv "HOME" "/tmp") + (copy-recursively "brian2/tests" "tests") + (delete-file-recursively "brian2")))))) + (native-inputs + (list python-pytest + python-pytest-timeout + python-pytest-xdist + python-setuptools-scm)) + (propagated-inputs + (list python-cython + python-jinja2 + python-numpy + python-packaging + python-pyparsing + python-setuptools + python-sympy)) (home-page "https://briansimulator.org/") (synopsis "Clock-driven simulator for spiking neural networks") (description |