diff options
Diffstat (limited to 'gnu/packages/python-science.scm')
| -rw-r--r-- | gnu/packages/python-science.scm | 53 |
1 files changed, 44 insertions, 9 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index d15a67f6cd1..fbac93c0fda 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -86,6 +86,7 @@ #:use-module (gnu packages mpi) #:use-module (gnu packages networking) #:use-module (gnu packages ninja) + #:use-module (gnu packages nss) #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) @@ -5531,7 +5532,7 @@ tests and comparing subsequent results against that cache.") (define-public python-pyvista (package (name "python-pyvista") - (version "0.44.2") + (version "0.46.5") (source (origin (method git-fetch) @@ -5540,7 +5541,7 @@ tests and comparing subsequent results against that cache.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0lnh4cvf6wld7hm293015d80ny0vnsk96ckfvc2crzd1b79ch1v5")))) + (base32 "0553bp4fhbar9z0ybjv1mw1jhb5rhrr4v6q2bzmia0ww0dn8fc69")))) (build-system pyproject-build-system) (arguments (list @@ -5551,6 +5552,12 @@ tests and comparing subsequent results against that cache.") "--ignore=tests/examples/test_download_files.py" "--ignore=tests/examples/test_downloads.py" "--ignore=tests/plotting/test_texture.py" + ;; Tries to download data from GitHub at collection time. + "--ignore=tests/core/test_dataobject_filters.py" + ;; Tries to download data from GitHub at collection time. + "--ignore=tests/core/test_dataset_filters.py" + ;; Tries to download data from GitHub at collection time. + "--ignore=tests/plotting/test_plotter.py" "-k" (string-join (list "not test_actor_texture" "test_add_multiple" @@ -5630,7 +5637,23 @@ tests and comparing subsequent results against that cache.") "test_xdmf_reader" ;; XXX: incompatible with Numpy@2 ;; Drop when updating along with vtk. - "test_check_subdtype_changes_type") + "test_check_subdtype_changes_type" + ;; These tests try to download data from GitHub. + "test_read_exodus" + "test_nek5000_reader" + "test_exodus_reader_ext" + "test_exodus_reader_core" + "test_exodus_blocks" + "test_download_dataset_texture" + "test_structured_grid_cast_to_explicit_structured_grid" + "test_pad_image_multi_component_with_scalar" + "test_pad_image_raises" + "test_points_to_cells_and_cells_to_points_dimensions" + ;; These tests download cow.vtp from GitHub. + "test_meshio[cow_ugrid]" + "test_meshio[points_only]" + ;; Looks for pyproject.toml in installed package. + "test_max_positional_args_matches_pyproject") " and not ")) #:phases #~(modify-phases %standard-phases @@ -5638,7 +5661,7 @@ tests and comparing subsequent results against that cache.") (add-after 'unpack 'patch-pyproject (lambda _ (substitute* "pyproject.toml" - (("'vtk<9\\.4\\.0'," all) (string-append "#" all))))) + (("'vtk[^']*'," all) (string-append "#" all))))) (add-after 'unpack 'fix-failing-tests (lambda _ (substitute* "tests/plotting/test_plotting.py" @@ -5652,20 +5675,32 @@ tests and comparing subsequent results against that cache.") (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs - (list python-ipython - python-pytest + (list nss-certs-for-test + python-aiohttp + python-ipython + python-mypy + python-pandas + python-pytest-8 + python-pytest-cases + python-pytest-mock + python-pytest-pyvista python-scipy python-tqdm - python-trimesh)) + python-trimesh + which + xorg-server-for-tests)) (propagated-inputs - (list python-imageio + (list python-cmcrameri + python-cmocean + python-colorcet + python-imageio python-matplotlib python-meshio python-numpy python-pillow python-pooch python-scooby - vtk-9.3)) + vtk-9.5)) (home-page "https://docs.pyvista.org/") (synopsis "3D plotting and mesh analysis through VTK") (description |