diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 61 |
1 files changed, 29 insertions, 32 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 212501794e3..2c1699d2f4a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11960,41 +11960,38 @@ for Spatial Transcriptomics data.") (package (name "stpipeline") (version "1.8.1") - (source (origin - (method url-fetch) - (uri (pypi-uri "stpipeline" version)) - (sha256 - (base32 - "0har2g42fvaqpiz66lincy86aj1hvwzds26kxhxfamvyvv4721wk")))) + (source + (origin + (method url-fetch) + (uri (pypi-uri "stpipeline" version)) + (sha256 + (base32 "0har2g42fvaqpiz66lincy86aj1hvwzds26kxhxfamvyvv4721wk")))) (build-system pyproject-build-system) (arguments (list - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "requirements.txt" - (("argparse.*") ""))))))) - (propagated-inputs - (list htseq - python-cython - python-invoke - python-numpy - python-pandas - python-pympler - python-pysam - python-regex - python-scikit-learn - python-scipy - python-seaborn - python-setuptools - python-sqlitedict - python-taggd - samtools - star)) - (native-inputs - (list python-setuptools - python-wheel)) + #:phases '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "requirements.txt" + (("argparse.*") + ""))))))) + (propagated-inputs (list htseq + python-cython + python-invoke + python-numpy + python-pandas + python-pympler + python-pysam + python-regex + python-scikit-learn + python-scipy + python-seaborn + python-setuptools + python-sqlitedict + python-taggd + samtools + star)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/SpatialTranscriptomicsResearch/st_pipeline") (synopsis "Pipeline for spatial mapping of unique transcripts") (description |