gnu: packages/astronomy: Sort.

* gnu/packages/astronomy.scm::(python-jplephem, python-pint-pulsar,
python-pysat, and python-sep-pjw): Sort variables alphabetically.

Change-Id: I22d3ecd9c6e7ecb91c6a98b1608c2715ba828e75

1 files changed, 246 insertions, 246 deletions

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 5f5c8b88853..7772383e25b 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -4573,6 +4573,40 @@ observationally-derived galaxy merger catalogs.")
 satellite.")
     (license license:bsd-3)))
 
+(define-public python-jplephem
+  (package
+    (name "python-jplephem")
+    (version "2.22")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "jplephem" version))
+       (sha256
+        (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
+    (native-inputs
+     (list python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-numpy))
+    (home-page "https://github.com/brandon-rhodes/python-jplephem")
+    (synopsis "Python version of NASA DE4xx ephemerides")
+    (description
+     "@code{skyfield} computes positions for the stars, planets, and
+satellites in orbit around the Earth.  Its results should agree with the
+positions generated by the United States Naval Observatory and their
+Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
+milliarcsecond).")
+    (license license:expat)))
+
 (define-public python-jwst
   (package
     (name "python-jwst")
@@ -5325,6 +5359,131 @@ profiles.  In particular, PetroFit includes tools for performing accurate
 photometry, segmentations, Petrosian profiling, and Sérsic fitting.")
     (license license:bsd-3)))
 
+(define-public python-pint-pulsar
+  (package
+    (name "python-pint-pulsar")
+    (version "1.1.3")
+    (source
+     (origin
+       (method git-fetch) ; no tests data in the PyPI tarball
+       (uri (git-reference
+             (url "https://github.com/nanograv/PINT")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-k" (string-join
+                    ;; Tests failing with assertion on not correct precision
+                    ;; or missing data files.
+                    (list "not test_astropy_observatory"
+                          "test_copy_wideband_fitter_object"
+                          "test_IERS_B_builtin_agree_with_IERS_Auto_dX"
+                          "test_astropy_observatory"
+                          "test_time_construction_jds_exact[tdb]"
+                          "test_copy_toa_object"
+                          "test_copy_residuals"
+                          "test_copy_fitter_object")
+                    " and not ")
+              ;; XXX: The most of the tests require additional data, select
+              ;; files where they may run without it and check how to enable
+              ;; more.
+              "tests/test_Galactic.py"
+              "tests/test_all_component_and_model_builder.py"
+              "tests/test_astrometry.py"
+              "tests/test_astropy_observatory.py"
+              "tests/test_astropy_times.py"
+              "tests/test_astropy_version.py"
+              "tests/test_binary_generic.py"
+              "tests/test_binconvert.py"
+              "tests/test_compare.py"
+              "tests/test_compare_model.py"
+              "tests/test_compare_model_ecl_vs_icrs.py"
+              "tests/test_convert_parfile.py"
+              "tests/test_copy.py"
+              "tests/test_covariance_matrix.py"
+              "tests/test_datafiles.py"
+              "tests/test_derived_quantities.py"
+              "tests/test_derivedparams.py"
+              "tests/test_dmxrange_add_sub.py"
+              "tests/test_erfautils.py"
+              "tests/test_eventstats.py"
+              "tests/test_funcpar.py"
+              "tests/test_kepler.py"
+              "tests/test_leapsec.py"
+              "tests/test_model_manual.py"
+              "tests/test_numpy.py"
+              "tests/test_observatory_envar.py"
+              "tests/test_observatory_metadata.py"
+              "tests/test_parfile.py"
+              "tests/test_parunits.py"
+              "tests/test_pb.py"
+              "tests/test_phase.py"
+              "tests/test_pickle.py"
+              "tests/test_plk_widget.py"
+              "tests/test_plot_utils.py"
+              "tests/test_plrednoise.py"
+              "tests/test_pmtransform_units.py"
+              "tests/test_precision.py"
+              "tests/test_prefix_param_inheritance.py"
+              "tests/test_priors.py"
+              "tests/test_process_parfile.py"
+              "tests/test_pulsar_mjd.py"
+              "tests/test_pulsar_position.py"
+              "tests/test_reduced_precision.py"
+              "tests/test_satobs.py"
+              "tests/test_t2binary2pint.py"
+              "tests/test_tcb2tdb.py"
+              "tests/test_templates.py"
+              "tests/test_variety_parfiles.py"
+              "tests/test_version.py")
+      #:phases
+      #~(modify-phases %standard-phases
+         (add-after 'unpack 'remove-deprecated-scripts
+           ;; ImportError: cannot import name 'CompositeMCMCFitter' from
+           ;; 'pint.mcmc_fitter'.
+           ;;
+           ;; Removed in 1.1.3: Broken fitter class `CompositeMCMCFitter`
+           ;; (this fitter was added seemingly to deal with combined radio and
+           ;; high-energy datasets, but has since been broken for a while.)
+           (lambda _
+             (substitute* "pyproject.toml"
+               (("event_optimize_multiple.*") "")))))))
+    (native-inputs
+     (list python-pytest
+           python-setuptools
+           python-versioneer
+           python-wheel))
+    (propagated-inputs
+     (list python-astropy
+           python-corner
+           python-emcee
+           python-jplephem
+           python-loguru
+           python-matplotlib
+           python-nestle
+           python-numdifftools
+           python-numpy
+           python-pyerfa
+           python-scipy
+           python-uncertainties))
+    (home-page "https://github.com/nanograv/PINT")
+    (synopsis "Software for high-precision pulsar timing")
+    (description
+     "PINT is not TEMPO3 - package providing a Pulsar Timing, written in
+Python from scratch.
+Features:
+@itemize
+@item a robust system to produce high-precision timing results that is
+completely independent of TEMPO and Tempo2
+@item a system that is easy to extend and modify due to a good design
+and the use of a modern programming language, techniques, and libraries
+@end itemize")
+    (license license:bsd-3)))
+
 (define-public python-pixell
   (package
     (name "python-pixell")
@@ -5588,6 +5747,63 @@ Features:
 @end itemize")
     (license license:expat)))
 
+(define-public python-pysat
+  (package
+    (name "python-pysat")
+    (version "3.2.2")
+    (source
+     (origin
+       (method git-fetch) ; no tests data in the PyPI tarball
+       (uri (git-reference
+             (url "https://github.com/pysat/pysat")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "--durations=10" ; report 10 slowest tests
+              ;; Tests require pysatSpaceWeather which is not packed yet.
+              "--ignore=pysat/tests/test_utils_files.py"
+              "-k" "not test_from_os")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'pre-check
+            (lambda _
+              ;; Do not run test coverage.
+              (substitute* "pyproject.toml"
+                ((".*addopts.*cov.*") ""))
+              ;; No such file or directory: '/homeless-shelter/.pysat'
+              (setenv "HOME" "/tmp")
+              (mkdir "pysatData")
+              (invoke "python" "-c"
+                      "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
+    (native-inputs
+     (list python-pytest
+           python-pytest-xdist
+           python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-dask
+           python-netcdf4
+           python-numpy
+           python-pandas
+           python-portalocker
+           python-scipy
+           python-toolz
+           python-xarray))
+    (home-page "https://github.com/pysat/pysat")
+    (synopsis "Supports science analysis across disparate data platforms")
+    (description
+     "The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
+flexible interface for robust data analysis from beginning to end - including
+downloading, loading, cleaning, managing, processing, and analyzing
+data.  Pysat's plug-in design allows analysis support for any data, including
+user provided data sets.")
+    (license license:bsd-3)))
+
 (define-public python-pysiril
   (package
     (name "python-pysiril")
@@ -5954,6 +6170,36 @@ observations from the Nancy Grace Roman Space Telescope.")
      (list python-numpy))
     (synopsis "Python library for Source Extraction and Photometry")))
 
+(define-public python-sep-pjw
+  (package
+    (name "python-sep-pjw")
+    (version "1.3.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "sep_pjw" version))
+       (sha256
+        (base32 "0lhxfq1acc6qc8nszfdrpwq6dizaypz3b6frknfv5qm59mb488r0"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags #~(list "test.py")))
+    (native-inputs
+     (list python-cython
+           python-pytest
+           python-setuptools
+           python-setuptools-scm-next
+           python-wheel))
+    (propagated-inputs
+     (list python-numpy
+           python-sep))
+    (home-page "https://github.com/PJ-Watson/sep-pjw")
+    (synopsis "Alternative fork of SEP library")
+    (description
+     "This package provides an alternative maintained fork of SEP python
+library with bug fixtures.")
+    (license (list license:expat license:lgpl3+ license:bsd-3))))
+
 (define-public python-sirilic
   (package
     (name "python-sirilic")
@@ -6391,40 +6637,6 @@ instruments.")
     (license (list license:bsd-3     ; licenses/LICENSE.rst, same as python-astropy
                    license:expat)))) ; licenses/KOSMOS_LICENSE
 
-(define-public python-jplephem
-  (package
-    (name "python-jplephem")
-    (version "2.22")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "jplephem" version))
-       (sha256
-        (base32 "0b2rgb7pvwnl72pqjryf9c812mmdxr69fwiym7mnz05l2xrcr6hd"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "python" "-m" "unittest" "discover" "-s" "test")))))))
-    (native-inputs
-     (list python-setuptools
-           python-wheel))
-    (propagated-inputs
-     (list python-numpy))
-    (home-page "https://github.com/brandon-rhodes/python-jplephem")
-    (synopsis "Python version of NASA DE4xx ephemerides")
-    (description
-     "@code{skyfield} computes positions for the stars, planets, and
-satellites in orbit around the Earth.  Its results should agree with the
-positions generated by the United States Naval Observatory and their
-Astronomical Almanac to within 0.0005 arcseconds (half a @emph{mas} or
-milliarcsecond).")
-    (license license:expat)))
-
 (define-public python-photutils
   (package
     (name "python-photutils")
@@ -7393,63 +7605,6 @@ astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo,
 N-Chilada and RAMSES AMR outputs.")
     (license license:gpl3+)))
 
-(define-public python-pysat
-  (package
-    (name "python-pysat")
-    (version "3.2.2")
-    (source
-     (origin
-       (method git-fetch) ; no tests data in the PyPI tarball
-       (uri (git-reference
-             (url "https://github.com/pysat/pysat")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0gm71zafigwc94s37wqyl86yjabpq6wx9izwxag74wg1ynhqyvf0"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      #~(list "--durations=10" ; report 10 slowest tests
-              ;; Tests require pysatSpaceWeather which is not packed yet.
-              "--ignore=pysat/tests/test_utils_files.py"
-              "-k" "not test_from_os")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'check 'pre-check
-            (lambda _
-              ;; Do not run test coverage.
-              (substitute* "pyproject.toml"
-                ((".*addopts.*cov.*") ""))
-              ;; No such file or directory: '/homeless-shelter/.pysat'
-              (setenv "HOME" "/tmp")
-              (mkdir "pysatData")
-              (invoke "python" "-c"
-                      "import pysat; pysat.params['data_dirs'] = 'pysatData'"))))))
-    (native-inputs
-     (list python-pytest
-           python-pytest-xdist
-           python-setuptools
-           python-wheel))
-    (propagated-inputs
-     (list python-dask
-           python-netcdf4
-           python-numpy
-           python-pandas
-           python-portalocker
-           python-scipy
-           python-toolz
-           python-xarray))
-    (home-page "https://github.com/pysat/pysat")
-    (synopsis "Supports science analysis across disparate data platforms")
-    (description
-     "The Python Satellite Data Analysis Toolkit (pysat) provides a simple and
-flexible interface for robust data analysis from beginning to end - including
-downloading, loading, cleaning, managing, processing, and analyzing
-data.  Pysat's plug-in design allows analysis support for any data, including
-user provided data sets.")
-    (license license:bsd-3)))
-
 (define-public python-pysiaf
   (package
     (name "python-pysiaf")
@@ -7607,36 +7762,6 @@ well as ephemerides services
 @end itemize")
     (license license:bsd-3)))
 
-(define-public python-sep-pjw
-  (package
-    (name "python-sep-pjw")
-    (version "1.3.8")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (pypi-uri "sep_pjw" version))
-       (sha256
-        (base32 "0lhxfq1acc6qc8nszfdrpwq6dizaypz3b6frknfv5qm59mb488r0"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags #~(list "test.py")))
-    (native-inputs
-     (list python-cython
-           python-pytest
-           python-setuptools
-           python-setuptools-scm-next
-           python-wheel))
-    (propagated-inputs
-     (list python-numpy
-           python-sep))
-    (home-page "https://github.com/PJ-Watson/sep-pjw")
-    (synopsis "Alternative fork of SEP library")
-    (description
-     "This package provides an alternative maintained fork of SEP python
-library with bug fixtures.")
-    (license (list license:expat license:lgpl3+ license:bsd-3))))
-
 (define-public python-asdf-standard
   (package
     (name "python-asdf-standard")
@@ -7779,131 +7904,6 @@ System (WCS) tags.  Users should not need to install this directly; instead,
 install an implementation package such as gwcs.")
      (license license:bsd-3))))
 
-(define-public python-pint-pulsar
-  (package
-    (name "python-pint-pulsar")
-    (version "1.1.3")
-    (source
-     (origin
-       (method git-fetch) ; no tests data in the PyPI tarball
-       (uri (git-reference
-             (url "https://github.com/nanograv/PINT")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0n66z7v30q1981hx4q5vy3mibrh453gak8dd938038r5mwddya3f"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      #~(list "-k" (string-join
-                    ;; Tests failing with assertion on not correct precision
-                    ;; or missing data files.
-                    (list "not test_astropy_observatory"
-                          "test_copy_wideband_fitter_object"
-                          "test_IERS_B_builtin_agree_with_IERS_Auto_dX"
-                          "test_astropy_observatory"
-                          "test_time_construction_jds_exact[tdb]"
-                          "test_copy_toa_object"
-                          "test_copy_residuals"
-                          "test_copy_fitter_object")
-                    " and not ")
-              ;; XXX: The most of the tests require additional data, select
-              ;; files where they may run without it and check how to enable
-              ;; more.
-              "tests/test_Galactic.py"
-              "tests/test_all_component_and_model_builder.py"
-              "tests/test_astrometry.py"
-              "tests/test_astropy_observatory.py"
-              "tests/test_astropy_times.py"
-              "tests/test_astropy_version.py"
-              "tests/test_binary_generic.py"
-              "tests/test_binconvert.py"
-              "tests/test_compare.py"
-              "tests/test_compare_model.py"
-              "tests/test_compare_model_ecl_vs_icrs.py"
-              "tests/test_convert_parfile.py"
-              "tests/test_copy.py"
-              "tests/test_covariance_matrix.py"
-              "tests/test_datafiles.py"
-              "tests/test_derived_quantities.py"
-              "tests/test_derivedparams.py"
-              "tests/test_dmxrange_add_sub.py"
-              "tests/test_erfautils.py"
-              "tests/test_eventstats.py"
-              "tests/test_funcpar.py"
-              "tests/test_kepler.py"
-              "tests/test_leapsec.py"
-              "tests/test_model_manual.py"
-              "tests/test_numpy.py"
-              "tests/test_observatory_envar.py"
-              "tests/test_observatory_metadata.py"
-              "tests/test_parfile.py"
-              "tests/test_parunits.py"
-              "tests/test_pb.py"
-              "tests/test_phase.py"
-              "tests/test_pickle.py"
-              "tests/test_plk_widget.py"
-              "tests/test_plot_utils.py"
-              "tests/test_plrednoise.py"
-              "tests/test_pmtransform_units.py"
-              "tests/test_precision.py"
-              "tests/test_prefix_param_inheritance.py"
-              "tests/test_priors.py"
-              "tests/test_process_parfile.py"
-              "tests/test_pulsar_mjd.py"
-              "tests/test_pulsar_position.py"
-              "tests/test_reduced_precision.py"
-              "tests/test_satobs.py"
-              "tests/test_t2binary2pint.py"
-              "tests/test_tcb2tdb.py"
-              "tests/test_templates.py"
-              "tests/test_variety_parfiles.py"
-              "tests/test_version.py")
-      #:phases
-      #~(modify-phases %standard-phases
-         (add-after 'unpack 'remove-deprecated-scripts
-           ;; ImportError: cannot import name 'CompositeMCMCFitter' from
-           ;; 'pint.mcmc_fitter'.
-           ;;
-           ;; Removed in 1.1.3: Broken fitter class `CompositeMCMCFitter`
-           ;; (this fitter was added seemingly to deal with combined radio and
-           ;; high-energy datasets, but has since been broken for a while.)
-           (lambda _
-             (substitute* "pyproject.toml"
-               (("event_optimize_multiple.*") "")))))))
-    (native-inputs
-     (list python-pytest
-           python-setuptools
-           python-versioneer
-           python-wheel))
-    (propagated-inputs
-     (list python-astropy
-           python-corner
-           python-emcee
-           python-jplephem
-           python-loguru
-           python-matplotlib
-           python-nestle
-           python-numdifftools
-           python-numpy
-           python-pyerfa
-           python-scipy
-           python-uncertainties))
-    (home-page "https://github.com/nanograv/PINT")
-    (synopsis "Software for high-precision pulsar timing")
-    (description
-     "PINT is not TEMPO3 - package providing a Pulsar Timing, written in
-Python from scratch.
-Features:
-@itemize
-@item a robust system to produce high-precision timing results that is
-completely independent of TEMPO and Tempo2
-@item a system that is easy to extend and modify due to a good design
-and the use of a modern programming language, techniques, and libraries
-@end itemize")
-    (license license:bsd-3)))
-
 (define-public python-rad
   (package
     (name "python-rad")