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| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-12-31 17:33:09 +0000 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-12-31 17:33:28 +0000 |
| commit | cf4296ecb1c451162144bf6b98e129f522d2056e (patch) | |
| tree | e449de54914242466f6742d6077549e61ec15b73 /gnu | |
| parent | 7c849173505d8edbc6f9f56d136ddf5431672a67 (diff) | |
gnu: cnvkit: Fix tests.
* gnu/packages/bioinformatics.scm (cnvkit):
[arguments] <phases>: Add 'fix-pytest-config.
[propagated-inputs]: Remove python-future.
Change-Id: I845709c8e91e8ed86dcc25a9d5dc0469e8005f0b
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 12 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 71c48454163..a702188bf45 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21060,15 +21060,24 @@ polymorphisms) and indels with respect to a reference genome and more.") (origin (method git-fetch) (uri (git-reference - (url "https://github.com/etal/cnvkit") - (commit (string-append "v" version)))) + (url "https://github.com/etal/cnvkit") + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 "090yh17symcahddx399kcx0mcw4gdrcc2jil3p8lb92r8c8kglb5")))) (build-system pyproject-build-system) + (arguments + (list + ;; tests: 70 passed, 1 warning + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'fix-pytest-config + (lambda _ + (substitute* "pyproject.toml" + (("filterwarnings =.*") + ""))))))) (propagated-inputs (list python-biopython - python-future python-matplotlib python-numpy python-pandas |