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authorEfraim Flashner <efraim@flashner.co.il>2026-03-23 11:36:33 +0200
committerEfraim Flashner <efraim@flashner.co.il>2026-03-23 13:58:44 +0200
commitc7d24e6fbe00286b6862c4de65a9276344e44dc6 (patch)
tree826549998634cf4c2c0b01b077797aa47fedb631 /gnu
parent0bdb5c58ccf892c5ad384ddff7bed3aedd0f2940 (diff)
gnu: skewer: Relabel as version 0.2.2.
This is the tag for the given commit. * gnu/packages/bioinformatics.scm (skewer)[version]: Set to 0.2.2. Change-Id: I7f24b0320b5e20ba36e56c0a0708ea64ec7ba86a
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm60
1 files changed, 29 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5761ce0080a..544de8bac84 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16377,40 +16377,38 @@ browser.")
"The contents of this package are free for all uses."))))
(define-public skewer
- (let ((commit "978e8e46cba44595ece623e5387749284a86b74b")
- (revision "1"))
- (package
- (name "skewer")
- (version (git-version "0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/relipmoc/skewer")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69"))))
- (build-system gnu-build-system)
- (arguments
- (list
- #:tests? #f
- #:make-flags
- #~(list "CXXFLAGS=-std=c++11 -c -O2")
- #:phases
- #~(modify-phases %standard-phases
- (delete 'configure)
- (replace 'install
- (lambda _
- (install-file "skewer" (string-append #$output "/bin")))))))
- (home-page "https://github.com/relipmoc/skewer")
- (synopsis "Bit-masked k-difference matching")
- (description "Skewer implements the bit-masked k-difference matching
+ (package
+ (name "skewer")
+ (version "0.2.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/relipmoc/skewer")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1b3skfnj3zmd2065fiyxjrg4k6xsxfy6nxz80vmajd830mk6vr69"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:tests? #f
+ #:make-flags
+ #~(list "CXXFLAGS=-std=c++11 -c -O2")
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'install
+ (lambda _
+ (install-file "skewer" (string-append #$output "/bin")))))))
+ (home-page "https://github.com/relipmoc/skewer")
+ (synopsis "Bit-masked k-difference matching")
+ (description "Skewer implements the bit-masked k-difference matching
algorithm dedicated to the task of adapter trimming and it is specially
designed for processing next-generation sequencing (NGS) paired-end
sequences.")
- (license license:expat))))
+ (license license:expat)))
(define-public f-seq
(let ((commit "6ccded34cff38cf432deed8503648b4a66953f9b")