diff options
| author | Nicolas Graves <ngraves@ngraves.fr> | 2025-04-22 16:00:31 +0200 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-04-24 04:53:41 +0100 |
| commit | bfdf6a85b8025df358267499caedee1205821607 (patch) | |
| tree | 4a24740daff77f704059b3e85292149b52fbba26 /gnu | |
| parent | 7118f9feccb672ae47bb9ab3a79137a7557c748a (diff) | |
gnu: python-bed-reader: Improve phases' style.
* gnu/packages/bioinformatics.scm (python-bed-reader)
[arguments]{phases}: Improve phases 'install-python-library and
'check-python with site-packages procedure.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 22 |
1 files changed, 8 insertions, 14 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7eec4350ced..74cf9b0bf5d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2333,26 +2333,20 @@ version = ~s (add-after 'build-python-module 'install-python-module (assoc-ref py:%standard-phases 'install)) (add-after 'install-python-module 'install-python-library - (lambda _ - (let ((site (string-append #$output "/lib/python" - #$(version-major+minor - (package-version python)) - "/site-packages/"))) - (mkdir-p (string-append site "bed_reader")) + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((site (py:site-packages inputs outputs))) + (mkdir-p (string-append site "/bed_reader")) (copy-file "target/release/libbed_reader.so" - (string-append site "bed_reader/bed_reader.so"))))) + (string-append site "/bed_reader/bed_reader.so"))))) (add-after 'install-python-library 'add-install-to-pythonpath (assoc-ref py:%standard-phases 'add-install-to-pythonpath)) (add-after 'add-install-to-pythonpath 'check-python - (lambda* (#:key tests? #:allow-other-keys) + (lambda* (#:key inputs outputs tests? #:allow-other-keys) (when tests? - (let ((site (string-append #$output "/lib/python" - #$(version-major+minor - (package-version python)) - "/site-packages/")) + (let ((site (py:site-packages inputs outputs)) (data-dir "bed_reader/tests/data")) (symlink (canonicalize-path data-dir) - (string-append site data-dir)) + (string-append site "/" data-dir)) (invoke "pytest" "-v" #$output ;; These test require a 84 GB file. "-k" (string-join @@ -2363,7 +2357,7 @@ version = ~s "test_optional_dependencies") " and not ")) (delete-file-recursively - (string-append site "bed_reader/tests")) + (string-append site "/bed_reader/tests")) (delete-file-recursively (string-append #$output "/.pytest_cache"))))))))) (native-inputs (list python-pytest |