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| author | Ricardo Wurmus <rekado@elephly.net> | 2025-05-10 21:41:58 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-05-12 08:55:51 +0200 |
| commit | 901020cdebaa6923e5c3322e41543acc85da8ca4 (patch) | |
| tree | d0308e322b38f9319dc895dea54adffbf84e835c /gnu | |
| parent | d6f9f9b585fc44120a312f1920469b7fc9064cb8 (diff) | |
gnu: pigx-scrnaseq: Use Snakemake 5.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-7
with snakemake-5.
[arguments]: Set HOME.
Change-Id: I45257e138c4cf468d179ff35b0c705bc73046052
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index da927ebcc62..7995aaab1b7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -18310,6 +18310,8 @@ methylation and segmentation.") '(modify-phases %standard-phases (add-before 'configure 'set-additional-environment-variables (lambda _ + ;; Needed for tests + (setenv "HOME" "/tmp") ;; Needed because of loompy (setenv "NUMBA_CACHE_DIR" "/tmp") ;; Needed to capture environment @@ -18329,7 +18331,7 @@ methylation and segmentation.") python-loompy pandoc samtools - snakemake-7 + snakemake-5 star-for-pigx r-minimal r-argparser |