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| author | Ricardo Wurmus <rekado@elephly.net> | 2026-03-31 14:09:31 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2026-04-02 07:37:19 +0200 |
| commit | 86ea888ceb9b4a9f4269bd1d94d44998d19ea8d4 (patch) | |
| tree | e36fc2f267c33302a8ba439dad827a80785271f5 /gnu | |
| parent | 37a51f7aa8b39ec3524a1c439874bedcbc6f9d82 (diff) | |
gnu: r-biomformat: Update to 1.38.3.
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.38.3.
[arguments]: Remove phase 'testthat-compatibility.
[propagated-inputs]: Remove r-plyr.
Change-Id: I67e973b606f8135b0c4ef0dbf2d29229d87522a4
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 16 |
1 files changed, 3 insertions, 13 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7b79a971c1a..4422cca11f4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -28451,28 +28451,18 @@ separate published packages.") (define-public r-biomformat (package (name "r-biomformat") - (version "1.38.0") + (version "1.38.3") (source (origin (method url-fetch) (uri (bioconductor-uri "biomformat" version)) (sha256 (base32 - "1ydcgifdrgg48y7qxg0gw30h332y3yk3k3n17fajkv58mlvyx1yc")))) + "0b0w0mfx448ph8fla3nb4i50mvpnv498kxip7rnh14xwas9rhdd7")))) (properties `((upstream-name . "biomformat"))) (build-system r-build-system) - (arguments - (list - #:phases - '(modify-phases %standard-phases - ;; These deprecated procedures have been removed in testthat. - (add-after 'unpack 'testthat-compatibility - (lambda _ - (substitute* "tests/testthat/test-IO.R" - (("is_true\\(\\)") "expect_true") - (("is_false\\(\\)") "expect_false"))))))) (propagated-inputs - (list r-jsonlite r-matrix r-plyr r-rhdf5)) + (list r-jsonlite r-matrix r-rhdf5)) (native-inputs (list r-knitr r-testthat)) (home-page "https://github.com/joey711/biomformat/") (synopsis "Interface package for the BIOM file format") |