diff options
| author | Andreas Enge <andreas@enge.fr> | 2025-10-23 18:02:15 +0200 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2025-10-23 18:02:18 +0200 |
| commit | 7dfdf10fb661f3f4a087a3338525684ecfc11e15 (patch) | |
| tree | 61f7c02c59a393bc88a4aad34a4f6a28465adeab /gnu | |
| parent | cecb6f161d08d6121b56ebb8c25beec8f86f52af (diff) | |
gnu: Remove python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): Delete variable.
Fixes: guix/guix#2922
Change-Id: Ifcc556de612ee596019b4164e9f5b33e76bf67a3
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 0 insertions, 40 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2e706c80e2c..db5c0ff1f9d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21444,46 +21444,6 @@ filtered first. If no annotation entry remains, the entire variant is deleted.") (license license:expat))) -(define-public python-velocyto - (package - (name "python-velocyto") - (version "0.17.17") - (source - (origin - (method url-fetch) - (uri (pypi-uri "velocyto" version)) - (sha256 - (base32 "0fgygyzqgrq32dv6a00biq1p1cwi6kbl5iqblxq1kklj6b2mzmhs")) - (modules '((guix build utils))) - ;; Delete generated C files. - (snippet '(for-each delete-file - (find-files "." "\\.c"))))) - (build-system pyproject-build-system) - (arguments - '(#:phases (modify-phases %standard-phases - ;; Numba needs a writable dir to cache functions. - (add-before 'check 'set-numba-cache-dir - (lambda _ - (setenv "NUMBA_CACHE_DIR" "/tmp")))))) - (native-inputs (list python-joblib python-setuptools python-wheel)) - (propagated-inputs (list python-click - python-cython - python-h5py - python-loompy - python-matplotlib - python-numba - python-numpy - python-pandas - python-pysam - python-scikit-learn - python-scipy)) - (home-page "https://github.com/velocyto-team/velocyto.py") - (synopsis "RNA velocity analysis for single cell RNA-seq data") - (description - "Velocyto is a library for the analysis of RNA velocity. Velocyto -includes a command line tool and an analysis pipeline.") - (license license:bsd-2))) - (define-public arriba (package (name "arriba") |