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| author | Jake Forster <jakecameron.forster@gmail.com> | 2025-10-12 01:04:19 +1030 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-10-13 12:16:53 +0100 |
| commit | 7b2b2ed2f2a5c93fb9352f2795764d52525db8ef (patch) | |
| tree | cfea3814633ce1bc22ec8329271e4e986162a60f /gnu | |
| parent | 0d3220d7d994f962d1941ac1bb72a1951d9694e7 (diff) | |
gnu: gdcm: Update to 3.2.2.
* gnu/packages/bioinformatics.scm (gdcm): Update to 3.2.2.
[arguments]<#:test-exclude>: Do not exclude TestFileMetaInformation and
TestElement2; exclude TestImageReaderRandomEmpty and TestTransferSyntax.
<#:configure-flags>: Add "-DGDCM_BUILD_DOCBOOK_MANPAGES=ON".
[home-page]: Update.
Change-Id: I895dea12d4237d29f9f7d826f0a0d65f10f7e116
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 14 insertions, 12 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1e5108335e7..5a5ea40a6e9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -25302,7 +25302,7 @@ module capable of computing base-level alignments for very large sequences.") (define-public gdcm (package (name "gdcm") - (version "3.0.20") + (version "3.2.2") (source (origin (method git-fetch) (uri (git-reference @@ -25312,14 +25312,12 @@ module capable of computing base-level alignments for very large sequences.") (file-name (git-file-name name version)) (sha256 (base32 - "1rf0p7dnakjry0fa6ax1h762bn0l5n6ibfdxn077mjvwgpqan51l")))) + "1d9dm1wawgjy6vgw3shqchqpjcic6hprwhn0v7dw1qkgn3y8508w")))) (build-system cmake-build-system) (outputs '("out" "doc")) (arguments (list - #:test-exclude (string-join (list "TestFileMetaInformation" - "TestElement2" - "TestSCUValidation" + #:test-exclude (string-join (list "TestSCUValidation" "TestWriter" "TestAnonymizer4" "TestPrinter1" @@ -25329,23 +25327,27 @@ module capable of computing base-level alignments for very large sequences.") "TestStrictScanner2_1" "TestStrictScanner2" "TestStrictScanner2_2" - "TestFind") + "TestFind" + ;; Fail with 'Unsupported JPEG data precision 12'. + "TestImageReaderRandomEmpty" + "TestTransferSyntax") "|") #:configure-flags - #~(list "-DGDCM_BUILD_TESTING=true" + #~(list "-DGDCM_BUILD_DOCBOOK_MANPAGES=ON" + "-DGDCM_BUILD_TESTING=true" "-DGDCM_DOCUMENTATION:BOOL=ON" - "-DGDCM_PDF_DOCUMENTATION:BOOL=OFF" (string-append "-DGDCM_INSTALL_DOC_DIR=" - #$output:doc "/share/doc/" #$name)) + #$output:doc "/share/doc/" #$name) + "-DGDCM_PDF_DOCUMENTATION:BOOL=OFF") #:phases #~(modify-phases %standard-phases (add-before 'build 'set-HOME - ;; The build spams ‘Fontconfig error: No writable cache - ;; directories’ in a seemingly endless loop otherwise. + ;; The build with documentation spams ‘Fontconfig error: No writable + ;; cache directories’ in a seemingly endless loop otherwise. (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs (list docbook-xsl doxygen graphviz libxslt)) - (home-page "https://gdcm.sourceforge.net/wiki/index.php/Main_Page") + (home-page "https://sourceforge.net/projects/gdcm/") (synopsis "Grassroots DICOM library") (description "Grassroots DICOM (GDCM) is an implementation of the DICOM standard |