summaryrefslogtreecommitdiff
path: root/gnu
diff options
context:
space:
mode:
authorSharlatan Hellseher <sharlatanus@gmail.com>2025-10-31 18:56:45 +0000
committerSharlatan Hellseher <sharlatanus@gmail.com>2025-11-20 01:06:42 +0000
commit70bca483a6f3e1db8d9ee115c264891d2fee0fa6 (patch)
tree6adc25f83aebc5b120639252d5e2bf0c07d34274 /gnu
parent7aa4abb4bceaa31e913c03359711c3f3a129f7d1 (diff)
gnu: scvelo: Reduce closure size.
* gnu/packages/bioinformatics.scm (scvelo): [propagated-inputs]: Remove python-isort. [native-inputs]: Remove python-black, python-flake8, python-hypothesis, and python-wheel; add python-setuptools. Change-Id: Ieefb91cbe3481c64d7d9e5588d934216ef17f974
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm16
1 files changed, 6 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5fe9fd83b24..102c8f5d7f4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -24328,9 +24328,9 @@ aligner.")
(lambda _
(setenv "NUMBA_CACHE_DIR" "/tmp"))))))
(propagated-inputs
- (list python-anndata
+ (list pybind11 ;XXX: marked as install requirement
+ python-anndata
python-hnswlib
- python-isort
python-igraph
python-loompy
python-louvain
@@ -24341,15 +24341,11 @@ aligner.")
python-scanpy
python-scikit-learn
python-scipy
- python-umap-learn
- pybind11))
+ python-umap-learn))
(native-inputs
- (list python-black
- python-flake8
- python-hypothesis
- python-pytest
- python-setuptools-scm
- python-wheel))
+ (list python-pytest
+ python-setuptools
+ python-setuptools-scm))
(home-page "https://scvelo.org")
(synopsis "RNA velocity generalized through dynamical modeling")
(description "ScVelo is a scalable toolkit for RNA velocity analysis in