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authorRicardo Wurmus <rekado@elephly.net>2026-02-09 11:55:22 +0100
committerRicardo Wurmus <rekado@elephly.net>2026-02-09 11:55:22 +0100
commit1e7fdebe25951760e20b5bc733d0ea95ed8c4cfe (patch)
tree3ce877271a00bb32e7513885431709b2f09f2599 /gnu
parent07ba811e8969f7207a072266073b15bc8e356675 (diff)
gnu: rcas-web: Update to 0.2.0.
* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.2.0. [inputs]: Add r-biocmanager. Change-Id: I8ddf52180700ca917e75e099378c4fe9a7cdd9bb
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm93
1 files changed, 46 insertions, 47 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9a9bf063fe3..825df814840 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014-2025 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2014-2026 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@@ -15077,53 +15077,52 @@ characteristic tag shift values in these assays.")
(license license:bsd-3))))
(define-public rcas-web
- (let ((commit "71c93e3835653beb4eaa6e89b860bee3779729b8")
- (revision "2"))
- (package
- (name "rcas-web")
- (version (git-version "0.1.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/BIMSBbioinfo/rcas-web")
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0232g0f7g0w5cgaib462zbfssvfq8i0iqv5b5wfmbrbn0sw99l9a"))))
- (build-system gnu-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'install 'wrap-executable
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let* ((json #$(this-package-input "guile-json"))
- (redis #$(this-package-input "guile-redis"))
- (path (string-append
- json "/share/guile/site/3.0:"
- redis "/share/guile/site/3.0")))
- (wrap-program (string-append #$output "/bin/rcas-web")
- `("GUILE_LOAD_PATH" ":" = (,path))
- `("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
- `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))))))))
- (inputs
- (list bash-minimal
- r-minimal
- r-rcas
- guile-3.0
- guile-json-4
- guile-redis))
- (native-inputs
- (list autoconf
- automake
- pkg-config))
- (home-page "https://github.com/BIMSBbioinfo/rcas-web")
- (synopsis "Web interface for RNA-centric annotation system (RCAS)")
- (description "This package provides a simple web interface for the
+ (package
+ (name "rcas-web")
+ (version "0.2.0")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/BIMSBbioinfo/rcas-web")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0n1mh1132dx0y0ln2rhdy02rssyzp2xa2im5ynzjpnxxw0r6fgip"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'install 'wrap-executable
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((json #$(this-package-input "guile-json"))
+ (redis #$(this-package-input "guile-redis"))
+ (path (string-append
+ json "/share/guile/site/3.0:"
+ redis "/share/guile/site/3.0")))
+ (wrap-program (string-append #$output "/bin/rcas-web")
+ `("GUILE_LOAD_PATH" ":" = (,path))
+ `("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
+ `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))))))))
+ (inputs
+ (list bash-minimal
+ r-minimal
+ r-rcas
+ r-biocmanager
+ guile-3.0
+ guile-json-4
+ guile-redis))
+ (native-inputs
+ (list autoconf
+ automake
+ pkg-config))
+ (home-page "https://github.com/BIMSBbioinfo/rcas-web")
+ (synopsis "Web interface for RNA-centric annotation system (RCAS)")
+ (description "This package provides a simple web interface for the
@dfn{RNA-centric annotation system} (RCAS).")
- (license license:agpl3+))))
+ (license license:agpl3+)))
(define-public r-chipkernels
(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")