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| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-08-15 23:26:48 +0100 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-08-16 00:07:20 +0100 |
| commit | eb580ae9ce2c4668d64b351da1750851f45e7dfd (patch) | |
| tree | da9fdbd161127de68b6cab0de90ba001e1576490 /gnu/packages | |
| parent | 7235868525b12bcc8d63299bdebd1340b6b503c2 (diff) | |
gnu: vembrane: Update to 1.0.7.
* gnu/packages/bioinformatics.scm (vembrane): Update to 1.0.7.
[arguments] <phases>: Remove 'relax-requirements; add 'use-poetry-core.
[native-inputs]: Remove poetry; add python-poetry-core.
Change-Id: I50aca480b3aded3714d6e999efd3d12a4513e6a3
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 17 insertions, 14 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c9d745c0d6a..b249abb2d99 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -21337,32 +21337,35 @@ repeated areas between contigs.") (define-public vembrane (package (name "vembrane") - (version "0.13.2") + (version "1.0.7") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/vembrane/vembrane") - (commit (string-append "v" version)))) + (url "https://github.com/vembrane/vembrane") + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "1gdih56gpqd8ks3sd4ah844kac09hi3g073k9gvazb32ah50900w")))) + "127wmwj0162nfaql68jwxlkz7rbnjya70xrj4j8zwvcnxcj7x5v3")))) (build-system pyproject-build-system) (arguments (list #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "pyproject.toml" - (("pysam = \"\\^0.19\"") "pysam = \"^0.20\"") - (("numpy = \\{ version = \"\\^1.23\"") - "numpy = { version = \"^1\""))))))) + #~(modify-phases %standard-phases + (add-after 'unpack 'use-poetry-core + (lambda _ + ;; Patch to use the core poetry API. + (substitute* "pyproject.toml" + (("poetry.masonry.api") "poetry.core.masonry.api"))))))) (inputs - (list python-asttokens python-intervaltree python-numpy - python-pysam python-pyyaml)) + (list python-asttokens + python-intervaltree + python-numpy + python-pysam + python-pyyaml)) (native-inputs - (list poetry python-pytest)) + (list python-poetry-core + python-pytest)) (home-page "https://github.com/vembrane/vembrane") (synopsis "Filter VCF/BCF files with Python expressions") (description "Vembrane simultaneously filters variants based on |