diff options
| author | Nicolas Graves <ngraves@ngraves.fr> | 2026-01-20 21:39:50 +0100 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2026-03-20 14:11:37 +0000 |
| commit | 9e144f00bfe2deeef9c918f448c5fac7b827cb10 (patch) | |
| tree | bebb19b808c504dd1f0c57dc911625ca988870e9 /gnu/packages | |
| parent | e9b94ef3d256d11e61e8f6582a4159df6a67b8e1 (diff) | |
gnu: python-schema-salad: Update to 8.9.20251102115403.
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to 8.9.20251102115403.
[arguments]<#:test-flags>: Update them.
<#:phases>: Drop phase 'skip-failing-tests.
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 8 insertions, 23 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5b2d5194ff3..6f4c99a7ece 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6841,7 +6841,7 @@ accessing bigWig files.") (define-public python-schema-salad (package (name "python-schema-salad") - (version "8.9.20250723145140") + (version "8.9.20251102115403") (source (origin (method git-fetch) @@ -6850,16 +6850,17 @@ accessing bigWig files.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 - "1bqsbxx1275129j08aqz7qpzk1nlk4h9psvkm7hzb4liag8nyiql")))) + (base32 "0jcq6yam58q9xic9mzv09075s2mbng5bs0pxsh335i6jfwrp1b6x")))) (build-system pyproject-build-system) (arguments (list #:test-flags #~(list - ;; Skip failing test, probably innocent. - ;; TODO: Remove when upgrading because updated upstream. - "--deselect=schema_salad/tests/test_makedoc.py::test_detect_changes_in_html") + ;; These tests require network access. + "--deselect=schema_salad/tests/test_examples.py::test_bad_schemas" + "--deselect=schema_salad/tests/test_cg.py::test_load_by_yaml_metaschema" + ;; This test requires the cwl-runner binary. + "--ignore=schema_salad/tests/test_cwl11.py") #:phases #~(modify-phases %standard-phases (add-after 'unpack 'relax-requirements @@ -6869,23 +6870,7 @@ accessing bigWig files.") (substitute* "requirements.txt" (("mistune.*") "mistune")) (substitute* "setup.py" - (("mistune[^\"]*") "mistune")))) - (add-before 'check 'skip-failing-tests - (lambda _ - (let ((skip-test - (lambda (test-pattern) - (string-append "@pytest.mark.skip(reason=" - "\"test requires network access\")\n" - test-pattern)))) - (substitute* "schema_salad/tests/test_cg.py" - (("^def test_load_by_yaml_metaschema\\(" all) - (skip-test all))) - (substitute* "schema_salad/tests/test_cwl11.py" - (("^def test_(secondaryFiles|outputBinding|yaml_tab_error)\\(" all) - (skip-test all))) - (substitute* "schema_salad/tests/test_examples.py" - (("^def test_bad_schemas\\(" all) - (skip-test all))))))))) + (("mistune[^\"]*") "mistune"))))))) (propagated-inputs (list python-cachecontrol python-mistune |