diff options
| author | Janneke Nieuwenhuizen <janneke@gnu.org> | 2025-09-02 22:03:56 +0200 |
|---|---|---|
| committer | Janneke Nieuwenhuizen <janneke@gnu.org> | 2025-10-21 08:53:51 +0200 |
| commit | 75e930a7d67d11ecfa19487295acd7cb0793d3e5 (patch) | |
| tree | 5c2852a43f4e0b834dd0040063ead9d4d2aade1f /gnu/packages | |
| parent | 84b56d3965b916c118f133daf2d299bb55c5e307 (diff) | |
gnu: Add python-snakemake-executor-plugin-slurm-jobstep.
* gnu/packages/python-science.scm
(python-snakemake-executor-plugin-slurm-jobstep): New variable.
Change-Id: I477b8a30ae6642fa0e8d6e49a828ab0d3aa589b4
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/python-science.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index ce33eb570ca..998e3dad2c3 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -37,6 +37,7 @@ ;;; Copyright © 2025 Nguyễn Gia Phong <mcsinyx@disroot.org> ;;; Copyright © 2025 Jake Forster <jakecameron.forster@gmail.com> ;;; Copyright © 2025 Ghislain Vaillant <ghislain.vaillant@inria.fr> +;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -3434,6 +3435,35 @@ its software deployment plugins.") Snakemake and its storage plugins.") (license license:expat))) +(define-public python-snakemake-executor-plugin-slurm-jobstep + (package + (name "python-snakemake-executor-plugin-slurm-jobstep") + (version "0.3.0") + (home-page "https://github.com/snakemake/snakemake-executor-plugin-slurm-jobstep") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0ly15ywmbfcm5z7jy7dxiidpw3immsdd2k80vrm4pza721irxcar")))) + (build-system pyproject-build-system) + (arguments + (list #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "python3" "tests/tests.py"))))))) + (native-inputs (list python-poetry-core + snakemake)) + (synopsis "Snakemake executor plugin: slurm-jobstep") + (description "A Snakemake executor plugin for running srun jobs inside of +SLURM jobs (meant for internal use by python-snakemake-executor-plugin-slurm).") + (license license:expat))) + (define-public python-sparse (package (name "python-sparse") |