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authorAndreas Enge <andreas@enge.fr>2026-03-18 18:27:32 +0100
committerAndreas Enge <andreas@enge.fr>2026-03-18 18:27:32 +0100
commitfbd7a689457bfd9e27bd271c335959a3fbc280bd (patch)
tree4a1118355b2c047b7086b85dc565cd48ed5da5d6
parent1a00e3abf47055c33d33f29a202ce8a2dbdc0c46 (diff)
gnu: Remove fastx-toolkit.
* gnu/packages/bioinformatics.scm (fastx-toolkit): Delete variable. Change-Id: Ie710da17d23a04cfaafc1de28b2dc6aae23ccfd4
-rw-r--r--gnu/packages/bioinformatics.scm33
1 files changed, 0 insertions, 33 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ca7c06121e8..ec5af920058 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8461,39 +8461,6 @@ reasonable amount of time and memory. For large alignments, FastTree is
100-1,000 times faster than PhyML 3.0 or RAxML 7.")
(license license:gpl2+)))
-(define-public fastx-toolkit
- (package
- (name "fastx-toolkit")
- (version "0.0.14")
- (source (origin
- (method url-fetch)
- (uri
- (string-append
- "https://github.com/agordon/fastx_toolkit/releases/download/"
- version "/fastx_toolkit-" version ".tar.bz2"))
- (sha256
- (base32
- "01jqzw386873sr0pjp1wr4rn8fsga2vxs1qfmicvx1pjr72007wy"))))
- (build-system gnu-build-system)
- (inputs
- (list libgtextutils))
- (native-inputs
- (list gcc-6 ;; doesn't build with later versions
- pkg-config))
- (home-page "http://hannonlab.cshl.edu/fastx_toolkit/")
- (synopsis "Tools for FASTA/FASTQ file preprocessing")
- (description
- "The FASTX-Toolkit is a collection of command line tools for Short-Reads
-FASTA/FASTQ files preprocessing.
-
-Next-Generation sequencing machines usually produce FASTA or FASTQ files,
-containing multiple short-reads sequences. The main processing of such
-FASTA/FASTQ files is mapping the sequences to reference genomes. However, it
-is sometimes more productive to preprocess the files before mapping the
-sequences to the genome---manipulating the sequences to produce better mapping
-results. The FASTX-Toolkit tools perform some of these preprocessing tasks.")
- (license license:agpl3+)))
-
(define-public flash
(package
(name "flash")