gnu: Remove python-accupy.

* gnu/packages/maths.scm (python-accupy): Delete variable.
* gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch,
gnu/packages/patches/python-accupy-use-matplotx.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Unregister patches.

Change-Id: I3364592d794986674bf5fc55463280f58f8efe8a

4 files changed, 0 insertions, 211 deletions

diff --git a/gnu/local.mk b/gnu/local.mk
index 34b082ea8a3..0a6c3fad005 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -2085,8 +2085,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/pthreadpool-system-libraries.patch	\
   %D%/packages/patches/python-3.11-fix-tests.patch		\
   %D%/packages/patches/python-3.12-fix-tests.patch		\
-  %D%/packages/patches/python-accupy-use-matplotx.patch		\
-  %D%/packages/patches/python-accupy-fix-use-of-perfplot.patch	\
   %D%/packages/patches/python-anyio-unuse-exceptiongroup-in-test.patch	\
   %D%/packages/patches/python-bed-reader-use-store-samples.patch	\
   %D%/packages/patches/python-chai-drop-python2.patch		\
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 1c066ec9418..72b383fffad 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -4352,54 +4352,6 @@ primes and prime k-tuplets up to 264.")
     (home-page "https://github.com/kimwalisch/primesieve")
     (license license:bsd-2)))
 
-(define-public python-accupy
-  (package
-    (name "python-accupy")
-    (version "0.3.6")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/diego-hayashi/accupy")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0sxkwpp2xy2jgakhdxr4nh1cspqv8l89kz6s832h05pbpyc0n767"))
-       (patches (search-patches "python-accupy-use-matplotx.patch"
-                                "python-accupy-fix-use-of-perfplot.patch"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; tests: 30 passed, 10 warnings
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'set-eigen-include-dir
-            (lambda _
-              (substitute* "setup.py"
-                (("include_dirs=\\[\"\\/usr\\/include\\/eigen3\\/\"\\]," _)
-                 (string-append "include_dirs=[\""
-                                #$(file-append (this-package-input "eigen")
-                                               "/include/eigen3/")
-                                "\"],"))))))))
-    (native-inputs
-     (list pybind11-2
-           python-matplotx
-           python-perfplot
-           python-pytest
-           python-setuptools))
-    (propagated-inputs
-     (list eigen
-           python-mpmath
-           python-numpy-1
-           python-pyfma))
-    (home-page "https://github.com/diego-hayashi/accupy")
-    (synopsis "Accurate calculation of sums and dot products")
-    (description
-     "@code{accupy} is a Python library for accurately computing sums
-and (dot) products.  It implements Kahan summation, Shewchuck's algorithm and
-summation in K-fold precision.")
-    (license license:gpl3+)))
-
 ;; It is unfortunate that we cannot just link with the existing blis package.
 (define-public python-blis
   (package
diff --git a/gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch b/gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch
deleted file mode 100644
index 5b874e00561..00000000000
--- a/gnu/packages/patches/python-accupy-fix-use-of-perfplot.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-From 567558a4eb9b73ab30f9e469b36091eccf445f80 Mon Sep 17 00:00:00 2001
-From: Felix Gruber <felgru@posteo.net>
-Date: Sun, 23 Apr 2023 16:48:59 +0200
-Subject: [PATCH] Fix use of perfplot.
-
-data tuples are unpacked by perfplot before it calls the kernel
-functions.
----
- tests/test_dot.py | 16 ++++++++--------
- 1 file changed, 8 insertions(+), 8 deletions(-)
-
-diff --git a/tests/test_dot.py b/tests/test_dot.py
-index a8160fe..51307ad 100644
---- a/tests/test_dot.py
-+++ b/tests/test_dot.py
-@@ -76,10 +76,10 @@ def test_speed_comparison1(n_range=None):
-     perfplot.plot(
-         setup=lambda n: (np.random.rand(n, 100), np.random.rand(100, n)),
-         kernels=[
--            lambda xy: np.dot(*xy),
--            lambda xy: accupy.kdot(*xy, K=2),
--            lambda xy: accupy.kdot(*xy, K=3),
--            lambda xy: accupy.fdot(*xy),
-+            lambda x, y: np.dot(x, y),
-+            lambda x, y: accupy.kdot(x, y, K=2),
-+            lambda x, y: accupy.kdot(x, y, K=3),
-+            lambda x, y: accupy.fdot(x, y),
-         ],
-         labels=["np.dot", "accupy.kdot[2]", "accupy.kdot[3]", "accupy.fdot"],
-         n_range=n_range,
-@@ -96,10 +96,10 @@ def test_speed_comparison2(n_range=None):
-     perfplot.plot(
-         setup=lambda n: (np.random.rand(100, n), np.random.rand(n, 100)),
-         kernels=[
--            lambda xy: np.dot(*xy),
--            lambda xy: accupy.kdot(*xy, K=2),
--            lambda xy: accupy.kdot(*xy, K=3),
--            lambda xy: accupy.fdot(*xy),
-+            lambda x, y: np.dot(x, y),
-+            lambda x, y: accupy.kdot(x, y, K=2),
-+            lambda x, y: accupy.kdot(x, y, K=3),
-+            lambda x, y: accupy.fdot(x, y),
-         ],
-         labels=["np.dot", "accupy.kdot[2]", "accupy.kdot[3]", "accupy.fdot"],
-         n_range=n_range,
--- 
-2.39.2
-
diff --git a/gnu/packages/patches/python-accupy-use-matplotx.patch b/gnu/packages/patches/python-accupy-use-matplotx.patch
deleted file mode 100644
index f3dd17da229..00000000000
--- a/gnu/packages/patches/python-accupy-use-matplotx.patch
+++ /dev/null
@@ -1,113 +0,0 @@
-From 1da1ed24cfba8a051b6c2f452a67ebfee77ca040 Mon Sep 17 00:00:00 2001
-From: Felix Gruber <felgru@posteo.net>
-Date: Sun, 23 Apr 2023 15:42:19 +0200
-Subject: [PATCH] Use dufte style from matplotx.
-
-The stand-alone dufte package has been deprecated in favor of the dufte
-style that has been integrated into matplotx.
----
- tests/test_dot.py  | 10 +++++-----
- tests/test_sums.py | 12 ++++++------
- tox.ini            |  2 +-
- 3 files changed, 12 insertions(+), 12 deletions(-)
-
-diff --git a/tests/test_dot.py b/tests/test_dot.py
-index 0a40a0c..a8160fe 100644
---- a/tests/test_dot.py
-+++ b/tests/test_dot.py
-@@ -1,5 +1,5 @@
--import dufte
- import matplotlib.pyplot as plt
-+import matplotx
- import numpy as np
- import perfplot
- import pytest
-@@ -33,7 +33,7 @@ def test_fdot(cond):
- 
- 
- def test_accuracy_comparison_illcond(target_cond=None):
--    plt.style.use(dufte.style)
-+    plt.style.use(matplotx.styles.dufte)
- 
-     if target_cond is None:
-         target_cond = [10 ** k for k in range(2)]
-@@ -61,13 +61,13 @@ def test_accuracy_comparison_illcond(target_cond=None):
-     for label, d in zip(labels, data.T):
-         plt.loglog(condition_numbers, d, label=label)
- 
--    dufte.legend()
-+    matplotx.line_labels()
-     plt.xlabel("condition number")
--    dufte.ylabel("relative error")
-+    matplotx.ylabel_top("relative error")
- 
- 
- def test_speed_comparison1(n_range=None):
--    plt.style.use(dufte.style)
-+    plt.style.use(matplotx.styles.dufte)
- 
-     if n_range is None:
-         n_range = [2 ** k for k in range(2)]
-diff --git a/tests/test_sums.py b/tests/test_sums.py
-index 1c0f6b0..8cd9ddb 100644
---- a/tests/test_sums.py
-+++ b/tests/test_sums.py
-@@ -1,5 +1,5 @@
--import dufte
- import matplotlib.pyplot as plt
-+import matplotx
- import numpy as np
- import perfplot
- import pytest
-@@ -32,7 +32,7 @@ def test_fsum(cond):
- 
- 
- def test_accuracy_comparison_illcond(target_conds=None):
--    plt.style.use(dufte.style)
-+    plt.style.use(matplotx.styles.dufte)
- 
-     if target_conds is None:
-         target_conds = [10 ** k for k in range(1, 2)]
-@@ -71,14 +71,14 @@ def test_accuracy_comparison_illcond(target_conds=None):
-     for label, color, d in zip(labels, colors, data.T):
-         plt.loglog(condition_numbers, d, label=label, color=color)
- 
--    dufte.legend()
-+    matplotx.line_labels()
-     plt.xlabel("condition number")
--    dufte.ylabel("relative error")
-+    matplotx.ylabel_top("relative error")
-     # plt.gca().set_aspect(1.3)
- 
- 
- def test_speed_comparison1(n_range=None):
--    plt.style.use(dufte.style)
-+    plt.style.use(matplotx.styles.dufte)
- 
-     if n_range is None:
-         n_range = [2 ** k for k in range(2)]
-@@ -109,7 +109,7 @@ def test_speed_comparison1(n_range=None):
- 
- 
- def test_speed_comparison2(n_range=None):
--    plt.style.use(dufte.style)
-+    plt.style.use(matplotx.styles.dufte)
- 
-     if n_range is None:
-         n_range = [2 ** k for k in range(2)]
-diff --git a/tox.ini b/tox.ini
-index 79a53ec..524b3bc 100644
---- a/tox.ini
-+++ b/tox.ini
-@@ -4,7 +4,7 @@ isolated_build = True
- 
- [testenv]
- deps =
--    dufte
-+    matplotx
-     perfplot
-     pytest
-     pytest-cov
--- 
-2.39.2
-