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| author | Sharlatan Hellseher <sharlatanus@gmail.com> | 2026-01-07 15:55:16 +0000 |
|---|---|---|
| committer | Rutherther <rutherther@ditigal.xyz> | 2026-01-25 21:22:15 +0100 |
| commit | c7a670c50f4288bef77bbdd884b14eeda782177a (patch) | |
| tree | a59936a88ea5551b2a1629dc3d3c76081c2f8ff0 | |
| parent | 2e32e4941eaa458249979671a7b45edd13f97a46 (diff) | |
gnu: python-pygam: Update to 0.12.0.
* gnu/packages/bioinformatics.scm (python-pygam): Update to 0.12.0.
[arguments] <test-flags>: Skip one test.
<phases>: Remove 'patch-pyproject.
[propagated-inputs]: Remove python-black, python-flake8, python-ipython,
and python-poetry-core.
[native-inputs]: Remove python-pytest-cov; add python-matplotlib and
python-setuptools.
Change-Id: I5b3b95deb2bbe455582d4c74fe672c62b9aa8ff4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 39 |
1 files changed, 17 insertions, 22 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 43a789a98af..9138cf56a7d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3781,7 +3781,7 @@ the managed genomes, STAR indexing and mapping and more.") (define-public python-pygam (package (name "python-pygam") - (version "0.9.1") + (version "0.12.0") (source (origin (method git-fetch) @@ -3790,30 +3790,25 @@ the managed genomes, STAR indexing and mapping and more.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1bv404idswsm2ay3yziq1i2cbydq4f3vjav5s4i15bgd13k7zvim")))) + (base32 "0xf4hly8cxfj73il6l37bd48gygrmky2kyx9l270f1ivnpz1545a")))) (build-system pyproject-build-system) (arguments (list - #:phases - #~(modify-phases %standard-phases - (add-before 'build 'patch-pyproject - (lambda _ - (substitute* "pyproject.toml" - ;; Change build backend - (("build-backend = .*") - "build-backend = \"poetry.core.masonry.api\"\n") - ;; Modify version field - (("^version = \"0.0.0\"") - (string-append "version = \"" #$version "\"")))))))) - (propagated-inputs (list python-black - python-flake8 - python-ipython - python-numpy - python-pandas - python-poetry-core - python-progressbar2 - python-scipy)) - (native-inputs (list python-mock python-pytest python-pytest-cov)) + ;; tests: 161 passed, 1 skipped, 1 deselected, 7 warnings + #:test-flags + ;; Assertion is not equal. + #~(list (string-append "--deselect=pygam/tests/test_gridsearch.py::" + "test_gridsearch_all_dimensions_independent")))) + (native-inputs + (list python-matplotlib + python-mock + python-pytest + python-setuptools)) + (propagated-inputs + (list python-numpy + python-pandas + python-progressbar2 + python-scipy)) (home-page "https://github.com/dswah/pyGAM") (synopsis "Generalized additive models in Python") (description |