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authorRicardo Wurmus <rekado@elephly.net>2025-03-11 15:00:37 +0100
committerRicardo Wurmus <rekado@elephly.net>2025-04-16 11:01:23 +0200
commit9e03c4f2c8c99f9f879e9cbc1ddacbd5f6bf65db (patch)
treec29aa0bc2b9f0cdefe59dab2e53235bb6f7b123a
parentd0b35b85209e5eb384864900027f81cc9f69eb88 (diff)
gnu: r-puniform: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-puniform): Move from here... * gnu/packages/cran.scm (r-puniform): ...to here. Change-Id: Ia826341194689fc3e35f8005d9f81de47b8746cf
-rw-r--r--gnu/packages/cran.scm63
-rw-r--r--gnu/packages/statistics.scm65
2 files changed, 63 insertions, 65 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 8c4d2bd8818..99d6464e6a4 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5588,6 +5588,69 @@ prototype-based, rather than class-based object oriented ideas.")
understand the language at a deeper level.")
(license license:gpl2)))
+(define-public r-puniform
+ (package
+ (name "r-puniform")
+ (version "0.2.7")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "puniform" version))
+ (sha256
+ (base32
+ "15q5wlcps7387rjz7p1f5kifg1fl5yxxy7gjx6fvspvqwjkjbs4z"))))
+ (properties `((upstream-name . "puniform")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-adgoftest r-metafor r-numderiv r-rcpp r-rcpparmadillo))
+ (home-page
+ "https://github.com/RobbievanAert/puniform")
+ (synopsis
+ "Meta-Analysis Methods Correcting for Publication Bias")
+ (description
+ "This package provides meta-analysis methods that correct for publication
+bias and outcome reporting bias. Four methods and a visual tool are currently
+included in the package.
+
+@enumerate
+@item The p-uniform method as described in van Assen, van Aert, and Wicherts
+(2015) @url{doi:10.1037/met0000025} can be used for estimating the average
+effect size, testing the null hypothesis of no effect, and testing for
+publication bias using only the statistically significant effect sizes of
+primary studies.
+
+@item The p-uniform* method as described in van Aert and van Assen (2019)
+@url{doi:10.31222/osf.io/zqjr9}. This method is an extension of the p-uniform
+method that allows for estimation of the average effect size and the
+between-study variance in a meta-analysis, and uses both the statistically
+significant and nonsignificant effect sizes.
+
+@item The hybrid method as described in van Aert and van Assen (2017)
+@url{doi:10.3758/s13428-017-0967-6}. The hybrid method is a meta-analysis
+method for combining an original study and replication and while taking into
+account statistical significance of the original study. The p-uniform and
+hybrid method are based on the statistical theory that the distribution of
+p-values is uniform conditional on the population effect size.
+
+@item The fourth method in the package is the Snapshot Bayesian Hybrid
+Meta-Analysis Method as described in van Aert and van Assen (2018)
+@url{doi:10.1371/journal.pone.0175302}. This method computes posterior
+probabilities for four true effect sizes (no, small, medium, and large) based
+on an original study and replication while taking into account publication
+bias in the original study. The method can also be used for computing the
+required sample size of the replication akin to power analysis in null
+hypothesis significance testing. @end enumerate
+
+The meta-plot is a visual tool for meta-analysis that provides information on
+the primary studies in the meta-analysis, the results of the meta-analysis,
+and characteristics of the research on the effect under study (van Assen and
+others, 2020).
+
+Helper functions to apply the Correcting for Outcome Reporting Bias (CORB)
+method to correct for outcome reporting bias in a meta-analysis (van Aert &
+Wicherts, 2020).")
+ (license license:gpl2+)))
+
(define-public r-rcolorbrewer
(package
(name "r-rcolorbrewer")
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7075ac2fc1a..24201cbaf68 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -3182,71 +3182,6 @@ files into/from Pandas DataFrames. It is a wrapper around the C library
mediation and estimating power.")
(license license:gpl2+)))
-(define-public r-puniform
- (package
- (name "r-puniform")
- (version "0.2.7")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "puniform" version))
- (sha256
- (base32
- "15q5wlcps7387rjz7p1f5kifg1fl5yxxy7gjx6fvspvqwjkjbs4z"))))
- (properties `((upstream-name . "puniform")))
- (build-system r-build-system)
- (propagated-inputs
- (list r-adgoftest r-metafor r-numderiv r-rcpp r-rcpparmadillo))
- (home-page
- "https://github.com/RobbievanAert/puniform")
- (synopsis
- "Meta-Analysis Methods Correcting for Publication Bias")
- (description
- "This package provides meta-analysis methods that correct for publication
-bias and outcome reporting bias. Four methods and a visual tool are currently
-included in the package.
-
-@enumerate
-@item The p-uniform method as described in van Assen, van Aert, and Wicherts
-(2015) @url{doi:10.1037/met0000025} can be used for estimating the average
-effect size, testing the null hypothesis of no effect, and testing for
-publication bias using only the statistically significant effect sizes of
-primary studies.
-
-@item The p-uniform* method as described in van Aert and van Assen (2019)
-@url{doi:10.31222/osf.io/zqjr9}. This method is an extension of the p-uniform
-method that allows for estimation of the average effect size and the
-between-study variance in a meta-analysis, and uses both the statistically
-significant and nonsignificant effect sizes.
-
-@item The hybrid method as described in van Aert and van Assen (2017)
-@url{doi:10.3758/s13428-017-0967-6}. The hybrid method is a meta-analysis
-method for combining an original study and replication and while taking into
-account statistical significance of the original study. The p-uniform and
-hybrid method are based on the statistical theory that the distribution of
-p-values is uniform conditional on the population effect size.
-
-@item
-The fourth method in the package is the Snapshot Bayesian Hybrid Meta-Analysis
-Method as described in van Aert and van Assen (2018)
-@url{doi:10.1371/journal.pone.0175302}. This method computes posterior
-probabilities for four true effect sizes (no, small, medium, and large) based
-on an original study and replication while taking into account publication bias
-in the original study. The method can also be used for computing the required
-sample size of the replication akin to power analysis in null hypothesis
-significance testing.
-@end enumerate
-
-The meta-plot is a visual tool for meta-analysis that
-provides information on the primary studies in the meta-analysis, the results
-of the meta-analysis, and characteristics of the research on the effect under
-study (van Assen and others, 2020).
-
-Helper functions to apply the Correcting for Outcome Reporting Bias (CORB)
-method to correct for outcome reporting bias in a meta-analysis (van Aert &
-Wicherts, 2020).")
- (license license:gpl2+)))
-
(define-public xlispstat
(let ((commit "f1bea6053df658ee48612bf1f63c35de99e2c649")
(revision "0"))