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| author | Nicolas Graves <ngraves@ngraves.fr> | 2025-10-08 23:48:32 +0200 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-10-09 11:34:28 +0100 |
| commit | 9b96e4d74e0de039bc734747be51ddd4b738dbff (patch) | |
| tree | 34a9eb7a29dcace5b7fdd54a0c28f634d9f5c535 | |
| parent | 776366d35f97e4eec7c283bddf28b45c62b9b605 (diff) | |
gnu: python-pybiomart: Remove development native-inputs.
* gnu/packages/bioinformatics.scm (python-pybiomart)[native-inputs]:
Remove python-bumpversion, python-pytest-cov, python-coveralls and
python-wheel.
[source]: Switch to git-fetch.
[arguments]: Relocate field.
Change-Id: I60065f76d561c53bd34832f88fea05ac6b58f24f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 13 insertions, 14 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a1e58814bad..43439000e29 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3756,33 +3756,32 @@ the managed genomes, STAR indexing and mapping and more.") (version "0.2.0") (source (origin - (method url-fetch) - (uri (pypi-uri "pybiomart" version)) + (method git-fetch) + (uri (git-reference + (url "https://github.com/jrderuiter/pybiomart") + (commit version))) + (file-name (git-file-name name version)) (sha256 - (base32 "1znq4msa0ibjxk1yirbrfd09w9zfn0jrgna6qrq0d0i1p46w5sp9")))) + (base32 "1x5rd33sa0gwj4nizn02lsc675bbzsspz74f38mp0fbxdp7qnxv8")))) (build-system pyproject-build-system) + (arguments + (list + #:test-flags + ;; Attempts to access the web. + #~(list "--ignore=tests/test_dataset.py"))) (propagated-inputs (list python-future python-pandas python-requests python-requests-cache)) (native-inputs - (list python-bumpversion - python-pytest - python-pytest-cov + (list python-pytest python-pytest-helpers-namespace python-pytest-mock - python-coveralls python-setuptools python-sphinx python-sphinx-autobuild - python-sphinx-rtd-theme - python-wheel)) - (arguments - (list - #:test-flags - ;; Attempts to access the web. - #~(list "--ignore=tests/test_dataset.py"))) + python-sphinx-rtd-theme)) (home-page "https://github.com/jrderuiter/pybiomart") (synopsis "A simple pythonic interface to biomart") (description |