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authorRicardo Wurmus <rekado@elephly.net>2025-03-03 14:42:30 +0100
committerRicardo Wurmus <rekado@elephly.net>2025-03-03 14:42:30 +0100
commit916be45e70d39de8e300e7f1abd07eab5a6a567f (patch)
treecf3d6d7d7776e138f6f13336779d9d132606683d
parent90f3f4099093a81899b2d5da9715df7935c42246 (diff)
gnu: Add r-lfc.
* gnu/packages/cran.scm (r-lfc): New variable. Change-Id: I71a31ebfd21bda11a5d068b0b3b79fdc50dcb469
-rw-r--r--gnu/packages/cran.scm23
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 2bb9649ab46..3ad2d47247e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -3709,6 +3709,29 @@ optimization as the @code{optim()} function. This package also adds more
stopping criteria as well as allowing the adjustment of more tolerances.")
(license license:gpl2)))
+(define-public r-lfc
+ (package
+ (name "r-lfc")
+ (version "0.2.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "lfc" version))
+ (sha256
+ (base32 "1fh3i5mhzgz8k6y32m2y7lilxvm10kjkp5b70zm06iygazsk8bvz"))))
+ (properties `((upstream-name . "lfc")))
+ (build-system r-build-system)
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/erhard-lab/lfc")
+ (synopsis
+ "Log fold change distribution tools for working with ratios of counts")
+ (description
+ "This is a package for ratios of count data such as obtained from RNA-seq
+are modelled using Bayesian statistics to derive posteriors for effects sizes.
+This approach is described in Erhard & Zimmer (2015) <doi:10.1093/nar/gkv696>
+and Erhard (2018) <doi:10.1093/bioinformatics/bty471>.")
+ (license license:asl2.0)))
+
(define-public r-lmds
(package
(name "r-lmds")