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| author | Ricardo Wurmus <rekado@elephly.net> | 2025-03-03 14:42:30 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2025-03-03 14:42:30 +0100 |
| commit | 916be45e70d39de8e300e7f1abd07eab5a6a567f (patch) | |
| tree | cf3d6d7d7776e138f6f13336779d9d132606683d | |
| parent | 90f3f4099093a81899b2d5da9715df7935c42246 (diff) | |
gnu: Add r-lfc.
* gnu/packages/cran.scm (r-lfc): New variable.
Change-Id: I71a31ebfd21bda11a5d068b0b3b79fdc50dcb469
| -rw-r--r-- | gnu/packages/cran.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 2bb9649ab46..3ad2d47247e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3709,6 +3709,29 @@ optimization as the @code{optim()} function. This package also adds more stopping criteria as well as allowing the adjustment of more tolerances.") (license license:gpl2))) +(define-public r-lfc + (package + (name "r-lfc") + (version "0.2.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "lfc" version)) + (sha256 + (base32 "1fh3i5mhzgz8k6y32m2y7lilxvm10kjkp5b70zm06iygazsk8bvz")))) + (properties `((upstream-name . "lfc"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://github.com/erhard-lab/lfc") + (synopsis + "Log fold change distribution tools for working with ratios of counts") + (description + "This is a package for ratios of count data such as obtained from RNA-seq +are modelled using Bayesian statistics to derive posteriors for effects sizes. +This approach is described in Erhard & Zimmer (2015) <doi:10.1093/nar/gkv696> +and Erhard (2018) <doi:10.1093/bioinformatics/bty471>.") + (license license:asl2.0))) + (define-public r-lmds (package (name "r-lmds") |
