diff options
| author | Nicolas Graves <ngraves@ngraves.fr> | 2026-01-07 00:05:22 +0100 |
|---|---|---|
| committer | Rutherther <rutherther@ditigal.xyz> | 2026-01-25 21:24:03 +0100 |
| commit | 4b6427549c166bca64a0e9b8be430c31b446c7d9 (patch) | |
| tree | 4b16700afdb73d6dfd6fbc6f0bc9b9bc5194d73d | |
| parent | 4347565cb889a8f37b09f24a94c59a84ef74d0d0 (diff) | |
gnu: python-pyspoa: Switch to pyproject.
* gnu/packages/bioinformatics.scm (python-pyspoa):
[build-system]: Switch to pyproject-build-system.
[arguments]: Improve style.
<#:phases>: Migrate phase 'check to <#:test-backend, #:test-flags>.
[native-inputs]: Add python-setuptools.
Change-Id: Ib38a5779d6b73050126c377f6b0c5d5a53ef25aa
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 44 |
1 files changed, 19 insertions, 25 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 5860421dfda..fcf560b9cc2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -24294,34 +24294,28 @@ browser.") (uri (git-reference (url "https://github.com/nanoporetech/pyspoa") (commit (string-append "v" version)) - (recursive? #true))) + (recursive? #t))) (file-name (git-file-name name version)) (sha256 - (base32 - "1lgf2shzhxkcsircd6vy46h27pjljd5q95fyz1cm3lkk702qbnzx")))) - (build-system python-build-system) + (base32 "1lgf2shzhxkcsircd6vy46h27pjljd5q95fyz1cm3lkk702qbnzx")))) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-before 'build 'build-libspoa - (lambda _ - (mkdir-p "src/build") - (with-directory-excursion "src/build" - (invoke "cmake" - "-Dspoa_optimize_for_portability=ON" - "-DCMAKE_BUILD_TYPE=Release" - "-DCMAKE_CXX_FLAGS=\"-I ../vendor/cereal/include/\" -fPIC" - "..") - (invoke "make")))) - (replace 'check - (lambda* (#:key inputs outputs tests? #:allow-other-keys) - (when tests? - (add-installed-pythonpath inputs outputs) - (invoke "python" "tests/test_pyspoa.py"))))))) - (propagated-inputs - (list pybind11)) - (native-inputs - `(("cmake" ,cmake-minimal))) + (list + #:test-backend #~'custom + #:test-flags #~(list "tests/test_pyspoa.py") + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'build-libspoa + (lambda _ + (mkdir-p "src/build") + (with-directory-excursion "src/build" + (invoke "cmake" "-Dspoa_optimize_for_portability=ON" + "-DCMAKE_BUILD_TYPE=Release" + "-DCMAKE_CXX_FLAGS=\"-I ../vendor/cereal/include/\" -fPIC" + "..") + (invoke "make"))))))) + (propagated-inputs (list pybind11)) + (native-inputs (list cmake-minimal python-setuptools)) (home-page "https://github.com/nanoporetech/pyspoa") (synopsis "Python bindings for the SIMD partial order alignment library") (description |