diff options
| author | Kjartan Oli Agustsson <kjartanoli@outlook.com> | 2025-06-18 18:07:30 +0000 |
|---|---|---|
| committer | Sharlatan Hellseher <sharlatanus@gmail.com> | 2025-06-22 12:54:09 +0100 |
| commit | 247afd63f28e75066649f54dfdbe913764d53518 (patch) | |
| tree | aef8594712bc6956570c76c331555fe9b53d60d5 | |
| parent | 1ff6229402c2f0644bbbde364621b568fbdcad37 (diff) | |
gnu: python-ikarus: Run guix style
* gnu/packages/bioinformatics.scm (python-ikarus): Run guix style.
Change-Id: I493beb55986808a8ba27eadcc48d8a2a20b1678e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 21 insertions, 24 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa5b12afaca..80e5f24f8fb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -22225,32 +22225,29 @@ single-cell RNA-seq data.") (method url-fetch) (uri (pypi-uri "ikarus" version)) (sha256 - (base32 - "086czpvj4yafz4vrq5rx2gy0bj2l8nzwnkk0gw8qvy4w133xjysy")))) + (base32 "086czpvj4yafz4vrq5rx2gy0bj2l8nzwnkk0gw8qvy4w133xjysy")))) (build-system pyproject-build-system) (arguments - `(#:tests? #false - #:phases - (modify-phases %standard-phases - ;; See https://github.com/BIMSBbioinfo/ikarus/issues/12 - (add-after 'unpack 'fix-issue-12 - (lambda _ - (substitute* "ikarus/classifier.py" - (("pyscenic.genesig") "ctxcore.genesig")))) - ;; Numba needs a writable dir to cache functions. - (add-before 'check 'set-numba-cache-dir - (lambda _ - (setenv "NUMBA_CACHE_DIR" "/tmp")))))) - (propagated-inputs - (list python-numpy - python-pandas - python-scipy - python-scanpy - python-anndata - python-ctxcore ;because of issue 12 - pyscenic)) - (native-inputs - (list python-setuptools python-wheel)) + `(#:tests? #f + #:phases (modify-phases %standard-phases + ;; See https://github.com/BIMSBbioinfo/ikarus/issues/12 + (add-after 'unpack 'fix-issue-12 + (lambda _ + (substitute* "ikarus/classifier.py" + (("pyscenic.genesig") + "ctxcore.genesig")))) + ;; Numba needs a writable dir to cache functions. + (add-before 'check 'set-numba-cache-dir + (lambda _ + (setenv "NUMBA_CACHE_DIR" "/tmp")))))) + (propagated-inputs (list python-numpy + python-pandas + python-scipy + python-scanpy + python-anndata + python-ctxcore ;because of issue 12 + pyscenic)) + (native-inputs (list python-setuptools python-wheel)) (home-page "https://github.com/BIMSBbioinfo/ikarus") (synopsis "Machine learning classifier of tumor cells") (description |