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| author | Ricardo Wurmus <rekado@elephly.net> | 2026-03-12 11:33:30 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2026-04-02 07:37:08 +0200 |
| commit | 10a1b8079d5dbed25734225c8c77ed14f0f2eed2 (patch) | |
| tree | 78c91592b6e1e5ceaae1fce08059c340af40ab02 | |
| parent | 999ae6d83077a5ffcbf56768ff03fdd20bbc5c20 (diff) | |
gnu: r-bpcells: Do not build bundled highway library.
* gnu/packages/bioinformatics.scm (r-bpcells)[source]: Remove bundled highway
sources.
[arguments]: Fix check.
[inputs]: Add google-highway.
Change-Id: Ib70e7f9f64053b9e840c8c5f04e966beb4cf2869
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 13 |
1 files changed, 10 insertions, 3 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9a476f3d1fc..5035bce27a2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -922,7 +922,10 @@ suite native in R.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw")))) + (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw")) + (modules '((guix build utils))) + (snippet + '(delete-file-recursively "r/src/vendor/highway")))) (properties `((upstream-name . "BPCells"))) (build-system r-build-system) (arguments @@ -930,7 +933,11 @@ suite native in R.") #:phases '(modify-phases %standard-phases (add-after 'unpack 'chdir - (lambda _ (chdir "r")))))) + (lambda _ + (substitute* "r/configure" + (("tools/hwy-test.cpp" m) + (string-append m " $HWY_LIBS $HWY_CFLAGS"))) + (chdir "r")))))) (propagated-inputs (list r-dplyr r-ggplot2 @@ -957,7 +964,7 @@ suite native in R.") r-igraph r-iranges r-matrixstats)) - (inputs (list hdf5 zlib)) + (inputs (list hdf5 google-highway zlib)) (native-inputs (list pkg-config)) (home-page "https://github.com/bnprks/BPCells") (synopsis "Single cell counts matrices to PCA") |