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| author | Simon Tournier <zimon.toutoune@gmail.com> | 2026-02-04 18:58:30 +0100 |
|---|---|---|
| committer | Simon Tournier <zimon.toutoune@gmail.com> | 2026-02-05 18:16:53 +0100 |
| commit | 0d2eb45aca683642a839068c4e8dc276ac2eb569 (patch) | |
| tree | 90092daee4d9f8ebb1d293480aed3b3873ceaedb | |
| parent | f41704d92686624fe183902b9ce178e7d52ab69c (diff) | |
gnu: Remove python-multivelo.
* gnu/packages/bioinformatics.scm (python-multivelo): Delete variable.
Fixes: guix/guix#5364
Change-Id: I7636eb262c9a3fcebde3678bad18110301ce8889
Merges: #6131
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 46 |
1 files changed, 0 insertions, 46 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 85a46e52a4f..4e670d1b73b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17507,52 +17507,6 @@ t-SNE algorithm. The implementation is described here: @url{http://lvdmaaten.github.io/publications/papers/JMLR_2014.pdf}.") (license license:bsd-3)))) -(define-public python-multivelo - (package - (name "python-multivelo") - (version "0.1.2") - (source (origin - (method url-fetch) - (uri (pypi-uri "multivelo" version)) - (sha256 - (base32 - "1b4qyngwagh5sc2ygyfqyirg63myzh1g1glk03a1ykxfii32cjlp")))) - (build-system pyproject-build-system) - (arguments - (list - #:tests? #f ;pypi source does not contain tests - #:phases - #~(modify-phases %standard-phases - (add-before 'sanity-check 'set-env - (lambda _ - ;; numba RuntimeError: cannot cache function 'rdist' - (setenv "NUMBA_CACHE_DIR" "/tmp")))))) - (native-inputs (list python-pypa-build)) - (propagated-inputs - (list python-anndata - python-h5py - python-ipywidgets - python-joblib - python-loompy - python-matplotlib - python-numba - python-numpy - python-pandas - python-scanpy - python-scikit-learn - python-scipy - python-scvelo - python-seaborn - python-tqdm - python-umap-learn)) - (home-page "https://github.com/welch-lab/MultiVelo") - (synopsis "Velocity inference from single-cell multi-omic data") - (description "MultiVelo uses a probabilistic latent variable model to -estimate the switch time and rate parameters of gene regulation, providing a -quantitative summary of the temporal relationship between epigenomic and -transcriptomic changes.") - (license license:bsd-3))) - (define-public python-mygene (package (name "python-mygene") |