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| author | Nguyễn Gia Phong <cnx@loang.net> | 2026-01-30 23:24:45 +0900 |
|---|---|---|
| committer | Andreas Enge <andreas@enge.fr> | 2026-02-04 16:06:41 +0100 |
| commit | 068c60cf75ba0cfeead782712ff9e991d4d4140b (patch) | |
| tree | ca3d3e55a3bc8d9638b2e146d4141b4605f2b217 | |
| parent | d0ac3f79a4c0133a6f4723bb881508384b1b9405 (diff) | |
gnu: scvelo: Deprecate in favor of python-scvelo.
* gnu/packages/bioinformatics.scm (python-scvelo): New variable.
(scvelo): Deprecate in favor of python-scvelo.
(r-netid)[propagated-inputs], (python-multivelo)[propagated-inputs]:
Replace scvelo with python-scvelo.
Change-Id: I45160537670785682e7d8a9333952b7105dc8c1f
Signed-off-by: Andreas Enge <andreas@enge.fr>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 13 |
1 files changed, 8 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2e7d485e185..85a46e52a4f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1398,7 +1398,7 @@ RNA-seq or spatial transcriptomics.") python-anndata python-geosketch python-scanpy - scvelo)) + python-scvelo)) (native-inputs (list r-knitr)) (home-page "https://github.com/WWXkenmo/NetID_package") (synopsis @@ -17541,10 +17541,10 @@ t-SNE algorithm. The implementation is described here: python-scanpy python-scikit-learn python-scipy + python-scvelo python-seaborn python-tqdm - python-umap-learn - scvelo)) + python-umap-learn)) (home-page "https://github.com/welch-lab/MultiVelo") (synopsis "Velocity inference from single-cell multi-omic data") (description "MultiVelo uses a probabilistic latent variable model to @@ -24382,9 +24382,9 @@ aligner.") ;; bwa itself is licenced under GNU General Public License v3.0. (license license:mpl2.0))) -(define-public scvelo +(define-public python-scvelo (package - (name "scvelo") + (name "python-scvelo") (version "0.3.3") (source (origin @@ -24443,6 +24443,9 @@ adapts RNA velocity to widely varying specifications such as non-stationary populations.") (license license:bsd-3))) +(define-deprecated-package scvelo + python-scvelo) + (define-public scregseg ;; 0.1.3 was released in 2023, there are a lot of comparability fixes on ;; master branch, use the latest commit for now. |