From f86ff1db98ebf80abcde89b698b705dc89bf7cea Mon Sep 17 00:00:00 2001 From: Gabriel Wicki Date: Thu, 5 Mar 2026 13:41:12 +0100 Subject: gnu: Pin old pybind11 version. * gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2). (python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree, python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change reference to pybind11-2. * gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp), gnu/packages/bioinformatics.scm (python-metacells, python-strawc, python-coolbox, python-pyspoa, python-scvelo), gnu/packages/chemistry.scm (avogadrolibs), gnu/packages/computer-architecture.scm (gem5), gnu/packages/duckdb.scm (python-duckdb), gnu/packages/electronics.scm (nextpnr, prjtrellis), gnu/packages/engineering.scm (python-orocos-kinematics-dynamics), gnu/packages/geo.scm (ogs-serial), gnu/packages/graphics.scm (openshadinglanguage, openimageio), gnu/packages/image-processing.scm (opencolorio), gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx, onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe, python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn, python-dlib), gnu/packages/maths.scm (python-accupy, python-ducc0), gnu/packages/networking.scm (libcamera), gnu/packages/opencl.scm (python-pyopencl), gnu/packages/package-management.scm (python-libmambapy), gnu/packages/physics.scm (python-brille, python-gofit), gnu/packages/python-check.scm (python-xdoctest), gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy, python-iminuit, python-osqp, python-pyamg, python-qdldl, python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma), gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal, gr-satellites, limesuite-ng), gnu/packages/simulation.scm (fenics, python-dolfin-adjoint), gnu/packages/statistics.scm (python-diptest, python-george), gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2. Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b Signed-off-by: Gabriel Wicki --- gnu/packages/python-science.scm | 22 +++++++++++----------- 1 file changed, 11 insertions(+), 11 deletions(-) (limited to 'gnu/packages/python-science.scm') diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 1175752e07c..b48896ef490 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -190,7 +190,7 @@ (number->string (parallel-job-count)) "1") "-E" (string-join ignored-tests "|"))))))))) - (native-inputs (list openssh-sans-x python python-numpy pybind11 zip)) + (native-inputs (list openssh-sans-x python python-numpy pybind11-2 zip)) (inputs (list gsl hdf5 openmpi postgresql)) (propagated-inputs (list python-pyyaml)) ;for the Python bindings (home-page "http://pyre.orthologue.com/") @@ -574,7 +574,7 @@ higher scores.") ;; a way to use a system library. (propagated-inputs (list python-numpy)) (native-inputs (list cmake-minimal - pybind11 + pybind11-2 python-pytest python-pytest-benchmark python-scikit-build-core @@ -812,7 +812,7 @@ it can be used for displaying many qualitatively different samples.") ;; verbose=True for more information. "TestOpRelConeQuad::test_oprelcone_2"))))) (native-inputs - (list pybind11 + (list pybind11-2 python-pytest python-setuptools)) (propagated-inputs @@ -1468,7 +1468,7 @@ Features: (list #:test-flags #~(list "-k" "not test_interactive_pyside6"))) (native-inputs (list cmake-minimal - pybind11 + pybind11-2 python-annotated-types python-boost-histogram python-ipykernel @@ -2363,7 +2363,7 @@ web, by sharing data and other research outputs.") (native-inputs (list cmake-minimal osqp - pybind11 + pybind11-2 python-pytest python-pytorch python-scikit-build-core @@ -2501,7 +2501,7 @@ different units.") (delete-file-recursively "pyamg")))))) (build-system pyproject-build-system) (native-inputs - (list pybind11 + (list pybind11-2 python-cppheaderparser python-pytest python-pyyaml @@ -2690,7 +2690,7 @@ or as a TikZ file for use in LaTeX documents; (build-system pyproject-build-system) (native-inputs (list cmake-minimal - pybind11 + pybind11-2 python-pytest python-setuptools)) (propagated-inputs (list python-numpy python-scipy)) @@ -2929,7 +2929,7 @@ genetic variation data.") python-pathspec python-tomli python-typing-extensions)) - (native-inputs (list pybind11 + (native-inputs (list pybind11-2 python-cattrs python-fastjsonschema python-hatch-fancy-pypi-readme @@ -3419,7 +3419,7 @@ cross-validation.") (inputs (list boost-1.88 openblas - pybind11 + pybind11-2 qhull xsimd)) (propagated-inputs @@ -4740,7 +4740,7 @@ readable.") (("#include ") "#include \n#include "))))))) (native-inputs - (list pybind11 + (list pybind11-2 python-cython python-setuptools)) (inputs @@ -5869,7 +5869,7 @@ science including tools for accessing data sets in Python.") "12i68jj9n1qj9phjnj6f0kmfhlsd3fqjlk9p6d4gs008azw5m8yn")))) (build-system pyproject-build-system) (propagated-inputs (list python-numpy-1)) - (native-inputs (list pybind11 python-pytest python-setuptools)) + (native-inputs (list pybind11-2 python-pytest python-setuptools)) (home-page "https://github.com/nschloe/pyfma") (synopsis "Fused multiply-add for Python") (description "@code{pyfma} provides an implementation of fused -- cgit v1.3