From d4b0dc047f9a1d44a1448d24794befcfc6ae90a4 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 2 Aug 2022 13:50:55 +0200
Subject: gnu: Add python-fbpca.

* gnu/packages/python-science.scm (python-fbpca): New variable.
---
 gnu/packages/python-science.scm | 20 ++++++++++++++++++++
 1 file changed, 20 insertions(+)

(limited to 'gnu/packages/python-science.scm')

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 57c9325f491..2f4f1818f32 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -544,6 +544,26 @@ region of practical equivalence (rope), or that the second classifier has
 higher scores.")
     (license license:expat)))
 
+(define-public python-fbpca
+  (package
+    (name "python-fbpca")
+    (version "1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "fbpca" version))
+              (sha256
+               (base32
+                "1lbjqhqsdmqk86lb86q3ywf7561zmdny1dfvgwqkyrkr4ij7f1hm"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     (list python-numpy python-scipy))
+    (home-page "https://fbpca.readthedocs.io/")
+    (synopsis "Functions for principal component analysis and accuracy checks")
+    (description
+     "This package provides fast computations for @dfn{principal component
+analysis} (PCA), SVD, and eigendecompositions via randomized methods")
+    (license license:bsd-3)))
+
 (define-public python-xarray
   (package
     (name "python-xarray")
-- 
cgit v1.3


From 4bc130dcc0608ad01fcf13934a101498018cba99 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Tue, 2 Aug 2022 13:51:11 +0200
Subject: gnu: Add python-geosketch.

* gnu/packages/python-science.scm (python-geosketch): New variable.
---
 gnu/packages/python-science.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

(limited to 'gnu/packages/python-science.scm')

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 2f4f1818f32..ff82a97fc9c 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -564,6 +564,29 @@ higher scores.")
 analysis} (PCA), SVD, and eigendecompositions via randomized methods")
     (license license:bsd-3)))
 
+(define-public python-geosketch
+  (package
+    (name "python-geosketch")
+    (version "1.2")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "geosketch" version))
+              (sha256
+               (base32
+                "0knch5h0p8xpm8bi3b5mxyaf1ywwimrsdmbnc1xr5icidcv9gzmv"))))
+    (build-system python-build-system)
+    (arguments '(#:tests? #false)) ;there are none
+    (propagated-inputs (list python-fbpca python-numpy python-scikit-learn))
+    (home-page "https://github.com/brianhie/geosketch")
+    (synopsis "Geometry-preserving random sampling")
+    (description "geosketch is a Python package that implements the geometric
+sketching algorithm described by Brian Hie, Hyunghoon Cho, Benjamin DeMeo,
+Bryan Bryson, and Bonnie Berger in \"Geometric sketching compactly summarizes
+the single-cell transcriptomic landscape\", Cell Systems (2019).  This package
+provides an example implementation of the algorithm as well as scripts
+necessary for reproducing the experiments in the paper.")
+    (license license:expat)))
+
 (define-public python-xarray
   (package
     (name "python-xarray")
-- 
cgit v1.3


From 7e130543733f7a0ffc4e7c68d7ab6619509083d7 Mon Sep 17 00:00:00 2001
From: "Paul A. Patience" <paul@apatience.com>
Date: Tue, 19 Jul 2022 16:14:11 +0000
Subject: gnu: python-pyvista: Update to 0.35.2.

* gnu/packages/python-science.scm (python-pyvista): Update to 0.35.2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
---
 gnu/packages/python-science.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

(limited to 'gnu/packages/python-science.scm')

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index ff82a97fc9c..95f60aae7b6 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -1226,7 +1226,7 @@ aggregated sum and more.")
 (define-public python-pyvista
   (package
     (name "python-pyvista")
-    (version "0.35.1")
+    (version "0.35.2")
     (source
      ;; The PyPI tarball does not contain the tests.
      ;; (However, we don't yet actually run the tests.)
@@ -1237,7 +1237,7 @@ aggregated sum and more.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1rwwn8a4j3i22il6dxr2qzrnnz3n1gjbpa2p8gfzrjmzp5lzzk81"))))
+        (base32 "1qmxrhqm3ag736yb761jy1himwlr3p676xyqbry61h97dj11n6sq"))))
     (build-system python-build-system)
     (propagated-inputs
      (list python-appdirs
-- 
cgit v1.3