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2026-04-02gnu: r-partykit: Update to 1.2-27.Ricardo Wurmus
* gnu/packages/cran.scm (r-partykit): Update to 1.2-27. Change-Id: I9b4bdcc8c8c6463c626528537122ef2af882985b
2026-04-02gnu: r-mvtnorm: Update to 1.3-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-mvtnorm): Update to 1.3-6. [native-inputs]: Add r-qrng. Change-Id: I3b1a40363190435d226f75cd89009ed6b033b5d3
2026-04-02gnu: r-multilevel: Update to 2.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-multilevel): Update to 2.8. Change-Id: I9a96cf21caa07c30f1b395994dc5d0e7e6ab576d
2026-04-02gnu: r-bma: Update to 3.18.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-bma): Update to 3.18.21. Change-Id: Ib8e813ba1e9562dbdd66218b44075f9bf529569b
2026-04-02gnu: r-activedriverwgs: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.1. [propagated-inputs]: Remove r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-hsapiens-ucsc-hg38, r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10. [native-inputs]: Add r-bsgenome-hsapiens-ucsc-hg19. Change-Id: I95a0dca9fca9c818d1c100cd1d6279338e28bc71
2026-04-02gnu: r-huge: Update to 1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-huge): Update to 1.5. [propagated-inputs]: Remove r-rcppeigen. [native-inputs]: Add r-testthat. Change-Id: I6f3b3eb27e5b7c59470528e710389e702f9d0d00
2026-04-02gnu: r-prodlim: Update to 2026.03.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-prodlim): Update to 2026.03.11. [native-inputs]: Add r-etm, r-survey, and r-testthat. [propagated-inputs]: Add r-scales. Change-Id: Ibe8e31a558d25fc040fd138883cbf6b7d69e2571
2026-04-02gnu: r-devtools: Update to 2.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-devtools): Update to 2.5.0. [arguments]: Skip tests that attempt to contact bioconductor.org. [propagated-inputs]: Add r-pak; move r-remotes from here... [native-inputs]: ...to here; add r-covr and r-quarto. Change-Id: Ic97d32a1adb7a9dd7be10bb4455a820c2cdeb44d
2026-04-02gnu: Add r-qrng.Ricardo Wurmus
* gnu/packages/cran.scm (r-qrng): New variable. Change-Id: I9686cfc7228ba8ce8b79726a7e9e768be840c9a0
2026-04-02gnu: Add r-pak.Ricardo Wurmus
* gnu/packages/cran.scm (r-pak): New variable. Change-Id: If904ac4a7a23b98b7bdcdd2564aa32d7da0aa9f8
2026-04-02gnu: Add r-pingr.Ricardo Wurmus
* gnu/packages/cran.scm (r-pingr): New variable. Change-Id: I02c64e0b92a88f492cae0dbd9f3b4abb1f42e353
2026-04-02gnu: r-systempiperdata: Update to 2.14.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.14.6. Change-Id: I8fae8955722d4691477042489c051f4c607ffee4
2026-04-02gnu: r-exactranktests: Update to 0.8-36.Ricardo Wurmus
* gnu/packages/cran.scm (r-exactranktests): Update to 0.8-36. Change-Id: Ib11ea082f4f505cf69da70faa58ca032089a8bae
2026-04-02gnu: r-spatstat-utils: Update to 3.2-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-utils): Update to 3.2-2. Change-Id: I1593e9b2de10614afe4e86de85ef61f524b68801
2026-04-02gnu: r-rjava: Update to 1.0-15.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 1.0-15. Change-Id: Ie85cab0d14ad80aad10d643ba4706e3f09e30881
2026-04-02gnu: r-listenv: Update to 0.10.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-listenv): Update to 0.10.1. Change-Id: Icd725b078b782f22b690f93f690fdabd9db259f9
2026-04-02gnu: r-effectsize: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 1.0.2. Change-Id: Ide12bf84f1be1b439635e336ddf5feea94bf1a48
2026-04-02gnu: r-multcomp: Update to 1.4-30.Ricardo Wurmus
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-30. Change-Id: I5d984eb19efbb31256835d6d66da8056903c9c46
2026-04-02gnu: r-adbcdrivermanager: Update to 0.22.0-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-adbcdrivermanager): Update to 0.22.0-1. Change-Id: I48653e7117a7e973e21817c55e0cb6e3f883000c
2026-04-02gnu: r-rcppde: Update to 0.1.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppde): Update to 0.1.9. Change-Id: I5706773569bd769734a13f677d960dc1cb2bc164
2026-04-02gnu: r-party: Update to 1.3-19.Ricardo Wurmus
* gnu/packages/cran.scm (r-party): Update to 1.3-19. Change-Id: Icf30c070bbf5ac2d174627cefeba93314663ba84
2026-04-02gnu: r-astsa: Update to 2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-astsa): Update to 2.5. Change-Id: I3566573fa6ecbd07920a83dbd987fbb1cf1d62cd
2026-04-02gnu: r-embedsom: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-embedsom): Update to 2.2.1. Change-Id: Ic4fc7f89afda7bc02179ad1dce4bd5a75757b1f0
2026-04-02gnu: r-shinystan: Enable all tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinystan)[arguments]: Remove phase 'delete-bad-tests. Change-Id: Ifc8667cc3683a7add0e388a772f5ca4d4b0adca8
2026-04-02gnu: r-janitor: Enable all tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-janitor)[arguments]: Remove phase 'delete-bad-tests. Change-Id: I692fa87a7ae12647fc1ae8fe2b38c960f8c58cfa
2026-04-02gnu: r-metafor: Replace custom phase with SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-metafor)[arguments]: Remove phase 'delete-bad-tests; supply SKIPPED-TESTS argument instead. Change-Id: I084e975dc3cebe5e1a5a7e1c09d6896bc7d056cc
2026-04-02gnu: r-calculus: Replace custom phase with SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-calculus)[arguments]: Remove phase 'delete-bad-tests; supply SKIPPED-TESTS argument instead. Change-Id: Iaeb02ed0de4fb43f45f300b19abb9486b0548ad2
2026-04-02gnu: r-lgr: Enable all tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-lgr)[arguments]: Remove phase 'delete-bad-tests. Change-Id: Ie5fd4c214fd1d9e56560c23c988897d6557ea3c9
2026-04-02gnu: r-zzlite: Replace custom phase with SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-zzlite)[arguments]: Remove phase 'delete-bad-tests; supply TEST-DIRECTORY and SKIPPED-TESTS arguments instead. Change-Id: I26401971d1a778c33e585dc1bd6294be2ad71cce
2026-04-02gnu: r-paws-common: Replace custom phase with SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-common)[arguments]: Remove phase 'delete-bad-tests; supply TEST-DIRECTORY and SKIPPED-TESTS arguments instead. Change-Id: I9910f74f9096c5c0e1a8dd4fc027385132ea231d
2026-04-02gnu: r-ggh4x: Replace custom phase with SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggh4x)[arguments]: Remove phase 'delete-bad-tests; supply TEST-DIRECTORY and SKIPPED-TESTS arguments instead. Change-Id: I888f7a62a74037fc2b8ec4894452043c8e195d6a
2026-04-02gnu: r-forestplot: Replace custom phase with SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-forestplot)[arguments]: Remove phase 'delete-bad-tests; supply TEST-DIRECTORY and SKIPPED-TESTS arguments instead. Change-Id: I785bd439887f016c4863b89c947292e357f65c75
2026-04-02gnu: r-rliger: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rliger, r-liger): Move variable definitions from here... * gnu/packages/bioconductor.scm (r-rliger, r-liger): ...to here; update to 2.2.1. [source]: Update source URL; remove obsolete snippet. [arguments]: Remove phases 'strip-jar-timestamps and 'build-java-part. [native-inputs]: Remove icedtea, optimizer-src, unzip, and zip; add r-circlize, r-complexheatmap, r-testthat, and r-viridis. [propagated-inputs]: Remove r-cowplot, r-dosnow, r-fnn, r-foreach, r-ggrepel, r-hmisc, r-ica, r-irlba, r-mclust, r-plyr, r-rann-l1, r-riverplot, and r-rtsne; add r-cli, r-delayedarray, r-hdf5array, r-hdf5r, r-leidenalg, r-lifecycle, r-magrittr, r-rann, r-rcppplanc, r-rcppprogress, r-rlang, r-s4vectors, r-scales, and r-uwot. Change-Id: I35bcdd94954f6fdf5aa641f9756c65a0efe1008e
2026-04-02gnu: Remove r-swne.Ricardo Wurmus
This package has been abandoned years ago. It depends on liger, which has been removed from CRAN on 2024-06-14. It is unlikely to work with the newer version of rliger. * gnu/packages/statistics.scm (r-swne): Remove variable. Change-Id: Ie7d7b3c9e1726b8219ad816c4b8db7621708c3b2
2026-04-02gnu: r-bpcells: Do not build bundled highway library.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bpcells)[source]: Remove bundled highway sources. [arguments]: Fix check. [inputs]: Add google-highway. Change-Id: Ib70e7f9f64053b9e840c8c5f04e966beb4cf2869
2026-04-02gnu: Add r-rcppplanc.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppplanc): New variable. Change-Id: Iea5a920cf93e17a8067dce4ca84e31962acf76d6
2026-04-02gnu: Add r-hdf5r-extra.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r-extra): New variable. Change-Id: I40287d71ed7230de84257f69f35c64515bb1d0d4
2026-04-02gnu: Add r-easy-utils.Ricardo Wurmus
* gnu/packages/cran.scm (r-easy-utils): New variable. Change-Id: I311f043a02fe13bda64a9e3679e20d72aa001b2d
2026-04-02gnu: Add r-highfive.Ricardo Wurmus
* gnu/packages/cran.scm (r-highfive): New variable. Change-Id: I67010dec8965cc5c80420f58d461f83456a29243
2026-04-02gnu: r-xgboost: Enable all tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost)[arguments]: Remove phase 'delete-bad-tests. Change-Id: If226037e79cd12e2156ba8fd7e3ca623814b18bc
2026-04-02gnu: r-spam: Use SKIPPED-TESTS argument.Ricardo Wurmus
* gnu/packages/cran.scm (r-spam)[arguments]: Remove phase 'delete-bad-tests; replace it with SKIPPED-TESTS argument. Change-Id: I7b94239df462f5575dbd9beeea8e830b522b8cdd
2026-04-02gnu: r-assertive-properties: Disable only one test.Ricardo Wurmus
* gnu/packages/cran.scm (r-assertive-properties)[arguments]: Remove phase 'delete-bad-tests; replace it with SKIPPED-TESTS argument. Change-Id: I697b4a812d377c5bcce636f406ed65e70f30b98f
2026-04-02gnu: r-pander: Be more explicit about disabling tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-pander)[native-inputs]: Add r-descr, r-microbenchmark, r-nlme, r-randomforest, r-rms, r-survival, r-tables, and r-zoo. [arguments]: Remove phase 'delete-bad-tests; replace it with TEST-DIRECTORY and SKIPPED-TESTS arguments; add phase 'testthat-compatibility. [properties]: Record more extra inputs. Change-Id: I480b905df23420be6a3c9d9547ee43abcb9fec24
2026-04-02gnu: r-sessioninfo: Replace custom phase with test arguments.Ricardo Wurmus
* gnu/packages/cran.scm (r-sessioninfo)[arguments]: Remove phase 'delete-bad-tests; provide SKIPPED-TESTS argument instead. Change-Id: I1103be5957f08f81ca0a82cfad232c76aa13db18
2026-04-02gnu: r-usethis: Replace custom phase with test arguments.Ricardo Wurmus
* gnu/packages/cran.scm (r-usethis)[arguments]: Remove phase 'delete-bad-tests; provide SKIPPED-TESTS argument instead. Change-Id: I2514272e09dae46183a250c66b5c097689b54467
2026-04-02gnu: r-libcoin: Replace custom phase with test arguments.Ricardo Wurmus
* gnu/packages/cran.scm (r-libcoin)[arguments]: Remove phase 'delete-bad-tests; provide TEST-DIRECTORY and SKIPPED-TESTS arguments instead. Change-Id: Ia8b2765472a1883862c70a3887514c1e5c1cd57b
2026-04-02gnu: r-ggformula: Replace custom phase with test arguments.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggformula)[arguments]: Remove phase 'delete-bad-tests; provide SKIPPED-TESTS argument instead. Change-Id: Id64f18c83b7a8168bd83c6ccf3e2aaa61db92687
2026-04-02gnu: r-reformulas: Replace custom phase with test arguments.Ricardo Wurmus
* gnu/packages/cran.scm (r-reformulas)[arguments]: Remove phase 'delete-bad-tests; provide TEST-DIRECTORY and SKIPPED-TESTS arguments instead. Change-Id: Ic6e25632ba131543d59b69ee9776d46c385329c1
2026-04-02gnu: r-network: Enable all tests.Ricardo Wurmus
* gnu/packages/cran.scm (r-network)[arguments]: Remove phase 'delete-bad-tests. Change-Id: Ie1f6a9c0cb521b217a5c65e16acbb26eeacfc3b9
2026-04-02gnu: r-shinytree: Replace custom phase with test arguments.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinytree)[arguments]: Remove phase 'delete-bad-tests; provide SKIPPED-TESTS argument instead. Change-Id: I176882b178735503b08cad1989b7e9e94f67b5ce
generated by cgit v1.3 (git 2.53.0) at 2026-05-30 04:20:20 +0000