| Age | Commit message (Collapse) | Author |
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* gnu/packages/python-xyz.scm (python-pomegranate): Move from here ...
* gnu/packages/machine-learning.scm: ... to here.
Change-Id: I1ef53f52439c0cae22e96ec381ecff3e2f616d71
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pomegranate): Update to 1.1.0.
[source]: Switch to git-fetch providing tests.
[arguments] <tests?, test-flags>: Enable them.
[propagated-inputs]: Remove python-joblib and python-pyyaml; add
python-apricot-select, python-scikit-learn, and python-pytorch.
[native-inputs]: Remove python-pandas and python-wheel; add
python-pytest.
Change-Id: Idf53aff2124c98fd7dc1172a31028a57347d2a4b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pygls): New variable.
Change-Id: Ifb4bf0277f87fec87161f57ec09b8916ee5de077
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-lsprotocol): New variable.
Change-Id: Id12df328f4c8f51f9c45914fba8f4991857f7596
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-array-api-strict): New variable.
Change-Id: Iab9649b967da898521316481ac466342afff2631
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-ipywidgets): Update to 8.1.4.
[build-system]: Switch pyproject-build-system.
[native-inputs]: Remove python-pytest-cov and python-setuptools-67; add
python-setuptools.
Change-Id: I09799c7cbcc5c59a04a792411977974c95d1688e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-awkward): Update to 2.8.5.
[arguments] <test-flags>: Skip CUDA tests only.
[propagated-inputs]: Remove python-typing-extensions.
[home-page]: Refresh it as seen in project's README.
Change-Id: I5cebada2be766618633b0d082c88ae3d15490e9f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-awkward-cpp): Update to 47.
[arguments]: Drop all.
[home-page]: Refresh it as seen in project's README.
Change-Id: I27be188fc95447a17c10b09f653bb28325367998
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pycollada): Update to 0.9.2.
[native-inputs]: Remove python-wheel.
Change-Id: I3cc70c7eeda9e4c54a0457ba430e4c6cbe1697f3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-console): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: I687d44df58fab4d62a3eac92f2dab1eebdc89921
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.6.3.
[arguments] <test-flags>: Skip one test.
<phases>: Add 'pre-check.
[propagated-inputs]: Add python-ipython, python-jupyter-core,
python-pyzmq, and python-traitlets.
[native-inputs]: Remove python-setuptools; add python-flaky and
python-hatchling.
Change-Id: Ia7d12b313cfcc890a5173813b92d97872ece742b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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Variable is not public and not in use by any other packages.
* gnu/packages/python-xyz.scm (python-jupyter-console-minimal): Delete variable.
Fixes: guix/guix#4881
Change-Id: I3b13ec6522f8c7c61a39e8f2262b652fbcb4210b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-client,
python-jupyter-client-bootstrap): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: I036632e68c808877de14da7f91863be50cdafd61
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-client): Take over
definition of python-jupyter-client-bootsrap with adjustments.
[arguments] <phases>: Remove 'hide-zmq-deprecation-warnings, and
'set-tool-file-name, it uses Python's "subprocess.Popen" now; add
'fix-pytest-config, and 'pre-check'; use default 'check.
(python-jupyter-client-bootsrap): Inherit from python-jupyter-client
Change-Id: I2cf3aceb4d33995853cd36e79034a5867e51444e
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jupyter-core): Move from here ...
* gnu/packages/jupyter.scm: ... to here.
Change-Id: Id577b47b0a6c9a8754e6dc4f07e5ac8ba4ea106d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-ipython-minimal): New variable.
Change-Id: Ib68f3a7f2d45064aa83c7d034011ce4b43391ab6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-ipython): Update to 9.8.0.
[arguments] <test-backend, test-flags>: Move custom {check} options
here.
<phases>: Remove 'make-docs-reproducible, resolved upstream; add
'pre-check and use default 'check.
[inputs]: Remove readline and which.
[propagated-inputs]: Remove python-colorama and python-exceptiongroup;
add python-ipython-pygments-lexers.
[native-inputs]: Remove python-pickleshare, python-pytest-asyncio-0.21,
and python-wheel; add python-pytest-asyncio and python-trio.
Change-Id: I3f96109e70772cb07b6a24bb83058473f182e3ed
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.3.3.
Change-Id: Id764c632d375f6e68782adf5385f227eefaebefd
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-jmespath):
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Remove python-setuptools-67; add python-setuptools.
Change-Id: I7c140b87eb9da476cfffc090663e5960b2c57de8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-hnswlib): Update to 0.8.0.
Change-Id: I494260ebd9230c729ca4dca0cc7ef5c2685bf19a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-seaborn)[arguments] <test-flags>:
Skip 3 tests.
Change-Id: I32ea08c88eadddf1afcbcab51f813ea5a79f8481
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-science.scm (python-dask-image): Update to 2025.11.0.
[arguments] <test-flags>: All tests passed.
<phases>: Add 'fix-pytest-config; rework 'set-version to read from envar.
[propagated-inputs]: Remove python-tifffile-for-dask-image; add
python-tifffile.
[native-inputs]: Remove python-setuptools-scm; add
python-setuptools-scm-next.
* gnu/packages/python-xyz.scm (python-tifffile-for-dask-image): Delete variable.
Change-Id: I928c39c848f3a20d5eb51d10e4c8374891b8f0b0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numba): Update to 0.62.1.
[arguments] <test-backend, tests-flags>: Rework the most of the skipped
tests as they passed a few times at least on AMD Ryzen 7 3800X CPU, skip
long running tests in the first place with "--exclude-tags" option.
<phases>: Add 'pre-check; use default 'check, set
'disable-proprietary-features after 'build phase.
[native-inputs]: Remove python-wheel.
Change-Id: I10e555f53b48d6404945faee373253bac4598e84
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-tables): Update to
aad9079c80ce3ae7f385d00af760d171dcc10535 commit.
[source]: Switch to git-fetch providing comparability with python-numexpr.
<snippet>: Delete "hdf5-blosc" git submodule.
[phases]{pre-build}: Substitute "hdf5-blosc" source path.
[inputs]: Add hdf5-blosc.
Change-Id: I7624af17709e150cea4f316cc4fd7f1786c3df1c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-annoy)[arguments]<test-flags>:
Skip 3 tests requiring network access.
[native-inputs]: Add python-h5py.
Change-Id: I6cd3343d43b0f91ddf6c117844afa6ba1e662068
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-xmp-toolkit): Update to 2.1.0.
[source]: Remove patch as applied upstream.
[arguments] <test-flags>: Run all tests.
<phases>: Remove 'configure-environment; add 'patch-source.
[native-inputs]: Remove python-setuptools and python-wheel; add
python-flit-core.
* gnu/packages/patches/python-xmp-toolkit-add-missing-error-codes.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Deregister patch.
Change-Id: I3443ecd6ad2bd423544d06d1e6e0de7079ed6296
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-extra-types): New variable.
Change-Id: I6603d0f0a5cbef6b4b9aede144623604ad5fbf37
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-annotated-doc): New variable.
Change-Id: Iff2bb3c690d9260d543e268210286c2591e67c84
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cron-converter): New variable.
Change-Id: I961bdbcbdc106ee9cd358471894497598251dfbd
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-ulid): New variable.
Change-Id: I251d3fb5c481879aab0de664232d612a9231a4cb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-settings): Update to 2.12.0.
[arguments] <test-flags>: Simplify.
<phases>: Remove 'relax-requirements.
[propagated-inputs]: Add python-typing-inspection, python-pyyaml, and
python-tomli.
Change-Id: I4163761c01d60f121e580b460f948f447c95f256
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-netcdf4): Update to 1.7.2.
[source]: Switch to git-fetch.
[phases]{set-configure-flags}: Add "-g -O2" options and set JPEG_DIR.
[propagated-inputs]: Add python-certifi.
[native-inputs]: Remove python-wheel; add python-packaging,
python-pytest, python-setuptools-scm, and python-typing-extensions.
Change-Id: I7e50f12623f3fc0afc42679a7dbc71286a0a3be1
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.14.1.
Change-Id: I35da8bea473838fdf0858f6ea3b80bf628b496f9
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-2): Deprecate variable.
* gnu/packages/astronomy.scm (python-czml3, python-edps, python-hvpy):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/cybersecurity.scm (gallia):
[inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/databases.scm (python-prisma)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-tortoise-orm, aerich)[native-inputs]: Remove python-pydantic-2;
add python-pydantic.
* gnu/packages/django.scm (python-django-ninja)[propagated-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/finance.scm (python-schwifty)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/games.scm (tuxemon)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/machine-learning.scm (python-spacy, python-thinc):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/maths.scm (python-libensemble)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/protobuf.scm (python-pure-protobuf)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-check.scm (python-inline-snapshot)[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-science.scm (python-iminuit):[native-inputs]:
Remove python-pydantic-2; add python-pydantic.
(python-pandera, python-vaex-core)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
* gnu/packages/python-web.scm: (python-cloudpathlib, python-huggingface-hub):
[native-inputs]: Remove python-pydantic-2; add python-pydantic.
(python-aws-sam-translator, python-weasel, python-openai,
python-fastapi, python-fastapi-csrf-protect,
python-fastapi-pagination-minimal, python-fastapi-pagination):
[propagated-inputs]: Remove python-pydantic-2; add python-pydantic.
* gnu/packages/python-xyz.scm: (python-safety-schemas,
python-pytoolconfig, python-pydantic-cli, python-pydantic-settings,
python-confection, python-safety)[propagated-inputs]: Remove
python-pydantic-2; add python-pydantic.
(python-deepdiff, python-lief)[native-inputs]: Remove
python-pydantic-2; add python-pydantic.
Change-Id: I20842162ae8a6c0abd54e4ef1fc676f928541184
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-1): New variable.
Change-Id: Ifc4b64d7c1b34a083c35a0cad6be8da4d7e6c20b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic): Update to 2.12.5.
[propagated-inputs]: Add python-annotated-types, python-pydantic-core, and
python-typing-inspection.
[native-inputs]: Remove python-setuptools and python-wheel; add tzdata-for-tests,
python-dirty-equals, python-faker, python-hatch-fancy-pypi-readme,
python-hatchling, python-jsonschema, python-pytest-benchmark,
python-pytest-examples, and python-pytest-run-parallel.
Change-Id: Ic844bac49a97736c1f2e2e01f7b732c0e2c36ea0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-pydantic-core): Update to
2.41.5. Enable tests.
[build-system]: Switch to pyproject-build-system.
[arguments] <modules>: Adjust for pyproject-build-system.
<phases>: Add 'prepare-cargo-build-system, and 'patch-pyproject.toml.
[native-inputs]: Add python-dirty-equals, python-pytest,
python-pytest-benchmark, python-pytest-mock, python-pytest-timeout,
python-typing-inspetion, python-tzdata, rust, and `(,rust "cargo")).
* gnu/packages/rust-crates.scm: (rust-cc-1.0.101, rust-jiter-0.11.1,
rust-lexical-parse-float-1.0.5, rust-lexical-parse-integer-1.0.5,
rust-lexical-util-1.0.6, rust-libc-0.2.155, rust-portable-atomic-1.6.0,
rust-proc-macro2-1.0.86, rust-pyo3-0.26.0,
rust-pyo3-build-config-0.26.0, rust-pyo3-ffi-0.26.0,
rust-pyo3-macros-0.26.0, rust-pyo3-macros-backend-0.26.0,
rust-quote-1.0.36, rust-rustversion-1.0.17, rust-speedate-0.17.0,
rust-syn-2.0.82): New variables.
* gnu/packages/rust-crates.scm (lookup-cargo-inputs):
{python-pydantic-core}: Refresh the list.
Change-Id: Id861b1bdebad583c9d34a708ee229c61d7c2a799
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-typing-inspection): New variable.
Change-Id: I1823a5683846b7c3620ed42c157bda437f7451f0
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-h5py): Update to 3.15.1.
[arguments] <test-flags>: Skip test recruiting the build with MPI
support.
<phases>: Remove 'relax-gcc-14-strictness; do not delete/implement custom
'check, use default.
[propagated-inputs]: Remove python-six.
[native-inputs]: Remove python-ipython, python-pytest-mpi, and
python-wheel.
Change-Id: Iee3bdaa9f3950404791e770ee600da1650842496
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-msgpack): Update to 1.1.2.
Change-Id: Ic69b1b9f8fc9d6da32c00584e86de42af167ec0c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.10.8.
[source]: Fetch from git and delete patches.
[#:configure-flags]: New argument.
[#:test-flags]: Consolidate all test arguments here, adding "-n" and
"--pyargs". Update skipped tests regexps.
[#:phases] {fix-and-disable-failing-tests}: Rename to...
{patch-commands}: ... this, and streamline phase.
{patch-dlopen}: Update patched file name.
{configure-environment}: Streamline.
{chdir}: New phase.
[native-inputs]: Add meson-python.
* gnu/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
Change-Id: Ib002aae96559efa625d2059c783536f77f4170a5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numpy-2): Deprecated in favor of
python-numpy.
(python-omero-py, python-numexpr) [propagated-inputs]: Remove
python-numpy-2; add python-numpy.
* gnu/packages/algebra.scm (kissfft)
[native-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/image.scm (vigra):
[inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/machine-learning.scm (python-spacy):
[propagated-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/machine-learning.scm (python-thinc):
[propagated-inputs]: Remove python-numpy-2; add python-numpy.
* gnu/packages/maths.scm (python-blis):
[native-inputs]: Remove python-numpy-2; add python-numpy.
Change-Id: Ie6041de76a227246ec63b0efa04d293dcc22b40b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-numpy): Move definition from
python-numpy-2 here.
(python-numpy-1): New variable, inherit from python-numpy.
Change-Id: I78bf7cae09b5bea59b536fe4ba14649a3398539c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cython-next): New variable.
Change-Id: I9bc2e1881edb4113f5919d39a6481067da986045
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-cython): Update to 3.1.7.
Change-Id: I0771e680017223c0ef0fee01fc30edda0e274ebb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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* gnu/packages/python-xyz.scm (python-fusepyng): Delete variable.
Fixes: guix/guix#3874
Change-Id: I68ca5d59379c0c90f29a83cf3921e5f4e5344a63
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
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This reverts commit 5379ca97180b66be67d039e58f8c03688d918f98.
The commit was intended for next-master.
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* gnu/packages/python-xyz.scm (python-pyzmq)[arguments]: Skip tests marked as
flaky.
Change-Id: I97204b237f8c2192b501b105b0b2c13434708df3
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* gnu/packages/python-xyz.scm (python-codespell)[native-inputs]: Remove
python-tomli, add python-setuptools-scm.
Change-Id: I0fb4999bc5070c0fcfebb5991966e488eca85109
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* gnu/packages/python-xyz.scm (python-pymongo): Update to 4.16.0.
Change-Id: I3ba3a2f5d2607c916d9228a57fc06c7db150e3ac
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