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2026-01-30gnu: Add python-cmasher.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-cmasher): New variable. Change-Id: I74c8ad6f9170b34b8c4fd1760c2ca3ba90d2a1f5
2026-01-25gnu: python-pyjanitor: Update to 0.32.5.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.32.5. [arguments] <test-flags>: Rework ignored/skipped tests. [propagated-inputs]: Remove python-requests. [native-inputs]: Add python-openpyxl and python-requests. [synopsys]: pandas->Pandas. Change-Id: I12f3f1f6ab84d63882325103e8c729d44656c97c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pandas-flavor: Update to 0.8.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.8.1. [phases]{fix-pytest-config}: New phase. [propagated-inputs]: Remove python-lazy-loader and python-packaging. [native-inputs]: Add python-setuptools and python-setuptools-scm. Change-Id: I1f1325350f77ed61146f32da5bdc81aad1daec27 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scikit-misc: Don't propagate python-numpydoc.Sören Tempel
* gnu/packages/python-science.scm (python-scikit-misc) [propagated-inputs]: Remove python-numpydoc. [native-inputs]: Add python-numpydoc. Change-Id: I9f3d3550789dd2943f496d90f59a063ac7df5e97 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pynetdicom: Don't propagate python-numpydoc.Sören Tempel
* gnu/packages/python-science.scm (python-pynetdicom) [propagated-inputs]: Remove python-numpydoc. [native-inputs]: Add python-numpydoc. Change-Id: Ib0bc20a289972af1d346f38213413c6930218ef0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ruffus: Switch to pyproject.Nicolas Graves
* gnu/packages/python-science.scm (python-ruffus): [build-system]: Switch to pyproject-build-system. [arguments]<#:phases>: Improve style. Improve 'check phase. [native-inputs]: Add python-setuptools. Change-Id: If6607ce5db313c97d5aaff062ac8bfa4b55d5dee Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-geosketch: Update to 1.3.Nicolas Graves
* gnu/packages/python-science.scm (python-geosketch): Update to 1.3. [source]: Switch to git-fetch. [build-system]: Switch to pyproject-build-system. [arguments]<#:tests>: Ignore them. [native-inputs]: Add python-setuptools. Change-Id: Ib86bb1a690585d925f3cd7ba801e89e04273d8e1 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pyvista: Ignore failing test.Nicolas Graves
* gnu/packages/python-science.scm (python-pyvista)[arguments] <#:test-flags>: Ignore failing test. Change-Id: I0dba730e92c7fd7e9d7d6273bba3b5e7646278c2 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pyts: Update to 0.13.0-0.4f3d97b.Nicolas Graves
* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0-0.4f3d97b. [source]: Switch to git-fetch. [native-inputs]: Remove python-wheel. [description]: Improve it. Change-Id: I64947107888826ad3db8cf1e2e4d3790c6a3e070 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-qutip: Update to 5.2.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-qutip): Update to 5.2.2. [arguments] <test-flags>: Rework skipped/ignored tests. <phases>: Use default 'check; add 'remove-local-source. [propagated-inputs]: Add python-cvxopt, python-cvxpy, python-mpi4py, python-mpmath, and python-tqdm. [native-inputs]: Remove python-numpy, python-packaging, python-scipy, and python-wheel; add python-pytest-rerunfailures. Change-Id: I1ee08658e6a7c6ef2c6b42b9d121113dedad04f7 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pytensor: Update to 2.36.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pytensor): Update to 2.36.3. [arguments] <test-flags>: Add option to skip/disable benchmark tests and rework skipped tests. [native-inputs]: Add python-pytest-benchmark and python-pytest-xdist. Change-Id: I9c3c42c21091524741ccef55e4698b59e818512d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pingouin: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pingouin): [arguments] <test-flags>: Rework skipped tests. <phases>: Add 'relax-requirements. [native-inputs]: Remove python-pytest-cov; add python-setuptools. Change-Id: If45e91fabbd479819731041c09dd6e1e561774d6 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scikit-survival: Fix indentation.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-survival): Fix indentation. Change-Id: Iff0ab38a0b484938613df08ffb0fbd83da489289 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scikit-survival: Update to 0.26.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-survival): Update to 0.26.0. [native-inputs]: Add python-pytest-xdist. Change-Id: If92ba627c894cb65976b7687062e738656b06e96 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Remove python-dask-expr.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-dask/bootstrap) (python-dask-expr): Delete variables. Fixes: guix/guix#4766 Change-Id: I8243329353fe41b0ffff35fd4383a9a09047cd52 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Remove python-statannot.Sharlatan Hellseher
A message from upstream: "This repository is not maintained anymore. I recommend using the forked package trevismd/statannotations, which has a cleaner API and further extends the functionalities of statannot." * gnu/packages/python-science.scm (python-statannot): Delete variable. Fixes: guix/guix#5355 Change-Id: Ib3347ff2077f62d4e97c0f9dc437b419d260c4b5 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pandas-stubs: Update to 2.3.3.251219.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandas-stubs): Update to 2.3.3.251219. [arguments]: Drop all but 2 skipped tests. [propagated-inputs]: Add python-numpy. [native-inputs]: Remove python-tables, which, xclip, xorg-server-for-tests, and xsel; add python-beautifulsoup4, python-fsspec, python-html5lib, python-jinja2, python-loguru, python-mypy, python-numexpr, python-openpyxl, python-typing-extensions, python-xlrd, python-xlsxwriter, and tzdata-for-tests. Change-Id: I7b7b85c1ce9b1e575069a79321db4ff515372942 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-narwhals: Update to 2.15.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-narwhals): Update to 2.15.0. [propagated-inputs]: Add python-duckdb, python-packaging, and python-rich. [native-inputs]: Remove python-duckdb. Change-Id: I0af82e4cbe2b3c2b3ae3803b77cde5f6c921a1a6 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-narwhals-minimal.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-narwhals-minimal): New variable. Change-Id: I972010ea88c649d41227c51256b739a022a350df Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-libneuroml: Update to 0.6.7.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-libneuroml): Update to 0.6.7. [native-inputs]: Remove python-wheel. Change-Id: I7ef49953a922116bd2c1aeb12ea548d0dd8afb18 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pyfma: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pyfma): [propagated-inputs]: Remove python-numpy; add python-numpy-1. [native-inputs]: Remove python-wheel. Change-Id: I8236576e39b7e6f8b981126cbf67fc55f35db83c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-salib: Update to 1.5.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-salib): Update to 1.5.2. [phases]{set-version}: New phase. [native-inputs]: Remove python-pytest-cov; add python-hatch-vcs. Change-Id: Ibff2633efa0f7657a40b580a3028cb71f57b923d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pyamg: Update to 5.3.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pyamg): Update to 5.3.0. [arguments] <test-flags>: Remove local source instead in phase.. <phases>: Add 'pre-check. [native-inputs]: Remove python-wheel. Change-Id: I3f231c1201013b4cbc7a8fbda14937aa0685827e Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scikit-surprise: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scikit-surprise): [propagated-inputs]: Remove python-numpy; add python-numpy-1. [native-inputs]: Remove python-wheel. Change-Id: I4ae8d087b602a04ff94ad1ef72c6ef0589938054 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-paramz Move to machinve-learning.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-paramz): Move from here ... * gnu/packages/machine-learning.scm: ... to here. Change-Id: I128d863626a9b70bf31c37e200d40ad6ccd48ad2 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-paramz: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-paramz): [propagated-inputs]: Remove python-numpy; add python-numpy-1. Change-Id: Ibc355d9a6e1ab635f63c21fe5e068a0ddfcc906a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-vector: Update to 1.7.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-vector): Update to 1.7.0. [propagated-inputs]: Add python-awkward, python-numba, and python-sympy. [native-inputs]: Remove python-awkward and python-sympy; add python-notebook, python-optree, and python-papermill. Change-Id: I760c26d69b5a5e4530e80d8e57af65db2fdf319f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Remove python-xarray-datatree.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-xarray-datatree): Delete variable. Fixes: guix/guix#5348 Change-Id: I7150cbe534f900286fb575f5883d9fe0980aa975 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-multiscale-spatial-image: Update to 2.0.3.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-multiscale-spatial-image): Update to 2.0.3. [propagated-inputs]: Remove quasiquote and ((unquote insight-toolkit) "python"); add python-dask, python-numpy, python-dateutil, python-spatial-image, python-xarray, python-xarray-dataclass, and python-zarr. [native-inputs]: Remove python-fsspec, python-ipfsspec, python-jsonschema, python-nbmake, python-pooch, python-pytest, python-pytest-mypy, python-urllib3, and python-zarr. Change-Id: I22f93379f92da785f851c17d149745ea9124a999 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-xarray-dataclass.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-xarray-dataclass): New variable. Change-Id: Id4293a97741704c434b6847b7b1ede8d35dd1edd Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-deepdish: Use python-numpy@1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-deepdish): [propagated-inputs]: Remove python-numpy; add python-numpy-1. [native-inputs]: Remove python-wheel. Change-Id: I8c4e2bd6538411df0f33d05b80fe178690fcc4d8 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-tdda: Skip one more test.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-tdda): [arguments] <test-flags>: Skip one more test. [native-inputs]: Remove python-wheel. Change-Id: I1bcb5223627945d580d64e911cd73cf2da06287a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-fastcluster: Update to 1.3.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fastcluster): Update to 1.3.0. [arguments]: Drop all. [native-inputs]: Remove python-wheel; add python-pytest. Change-Id: Ib57e7067d7eff527f5d84f297d668cc0c7997a9c Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-cvxpy: Update to 1.7.5.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-cvxpy): Update to 1.7.5. [arguments] <test-flags>: Skip some tests. [propagated-inputs]: Remove pybind11; add python-cvxopt. [native-inputs]: Remove python-wheel; add pybind11. Change-Id: I83974c14d6422284c1f31fe8922cd9e7bc5a9253 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-scs: Update to 3.2.10.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-scs): Update to 3.2.10. [source]: Do not pull git submodules. [phases]{substitute-git-submodules}: New phase. [inputs]: Add lapack. [native-inputs]: Add pythoncapi-compat and scs. Change-Id: I44778c1969f074c80ca4ddf8350b6db5c2db136a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-osqp: Update to 1.0.5.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-osqp): Update to 1.0.5. [arguments] <test-flags>: Rework skipped tests. [phases]{relax-requirements}: Remove phase. {fix-osqp-source-location}: New phase. [propagated-inputs]: Remove python-qdldl; add python-jinja2, python-joblib, and python-setuptools. [native-inputs]: Remove python-setuptools and python-wheel; add osqp, pybind11, python-pytorch, python-scikit-build-core, and qdldl. Change-Id: Ic6180f814a215d5bd772e4134f7ca291f1120081 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-numpoly: Update to 1.3.4.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numpoly): Update to 1.3.4. [arguments] <test-flags>: Skip one test. [native-inputs]: Remove python-wheel; add python-cython. Change-Id: I62142fd288ccfbc6506ed44d054b25af801a6b16 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-plotly: Update to 5.24.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-plotly): Update to 5.24.1. [arguments] <test-flags>: Rework skipped tests. [propagated-inputs]: Remove python-ipython, python-pandas, python-pillow, python-requests, python-retrying, python-scikit-image, python-statsmodels, and python-vaex-core; add python-packaging. [native-inputs]: Add python-geopandas, python-ipykernel, python-ipython-minimal, python-matplotlib, python-numpy-1, python-orjson, python-pandas, python-pillow, python-psutil, python-pyshp, python-pytz, python-requests, python-retrying, python-scikit-image, python-scipy, python-shapely, python-statsmodels, python-tenacity, and python-vaex-core. Change-Id: Ib9c80494d708627f4c0b30a18b4ddf53a33484ce Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-vaex-core: Update to 4.19.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-vaex-core): Update to 4.19.0. [inputs]: Remove pybind11. [propagated-inputs]: Remove python-click, python-progressbar2, python-pydantic-settings, and python-requests; add python-diskcache, python-fsspec, python-graphviz, python-h5py, python-httpx, python-psutil, and python-s3fs. [native-inputs]: Remove python-pytest and python-wheel; add pybind11. Change-Id: Id9f65420d6be54e27ba850528c3fc3599696f320 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-fbpca: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-fbpca)[arguments] <test-flags>: Skip one test. Change-Id: I98ea94a1986e465ad41e6d0099ad4a1f45506c8e Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pandera: Update to 0.27.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandera): Update to 0.27.1. [arguments] <test-flags>: Rework skipped tests. Change-Id: I7a21aa0e343cdf726e9d2c677bfccb0041dac39a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: Add python-anndata-minimal.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-anndata-minimal): New variable. Change-Id: I9503ac08d0fa630d748574bb121690144a80bfea Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-anndata: Update to 0.12.7.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-anndata): Update to 0.12.7. [arguments] <test-flags>: Skip CUDA dependent tests. [phases]{set-version}: Remove setting zip timestamp logic. [propagated-inputs]: Remove python-importlib-metadata, python-scikit-learn, and python-setuptools; add python-numpy. [native-inputs]: Add hdf5, python-openpyxl, python-pyarrow, python-pytest-randomly, and python-scikit-learn. Change-Id: I8e68cf85d435a13db995ea966ed5ff9edac3d672 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-pythran: Clean up artifacts.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pythran): Adjust style and remove unused parts. [source] <url>: Use a direct URL string. [arguments] <test-flags, phase:pre-check>: Drop them as not used. [native-inputs]: Remove openblas, python-pytest, python-pytest-xdist, and python-wheel. [home-page]: Move above [synopsis]. Change-Id: I7708981548ce68351c00fbf4e8f8e806a18f798a Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-asap3: Update to 3.13.10.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-asap3): Update to 3.13.10. [arguments] <tests?>: Enable. [native-inputs]: Add python-pytest. Change-Id: I166dfaf5f07f23d2d835d70f460cfa5f3f31ddb9 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-ase: Update to 3.26.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-ase): Update to 3.26.0. [arguments] <test-flags>: Run tests in parallel up to 8 threads. [native-inputs]: Remove python-wheel. Change-Id: Ib2e5c9751f6c3358bb35084076f79586473da88f Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-numdifftools: Update to 0.9.42.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numdifftools): Update to 0.9.42. [arguments] <test-flags>: Keep only exclusion markers. <phases>: Remove 'relax-requirements; add 'fix-pytest-config. [propagated-inputs]: Add python-matplotlib. [native-inputs]: Remove python-setuptools, python-setuptools-scm, and python-wheel; add python-pdm-backend. Change-Id: I87bdd34812df8771f53dd2ab8cfc4634ffb0b07d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-modin: Update to 0.37.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-modin): Update to 0.37.1. [arguments] <test-flags>: Rework options. <phases>: Remove 'loosen-requirements; add 'versioneer, and 'fix-pytest-config; rework {check} phase to include some API tests scenarios. [propagated-inputs]: Remove python-cloudpickle and python-s3fs; add python-fsspec, python-psutil, and python-typing-extensions. [native-inputs]: Remove python-jinja2, python-lxml, python-matplotlib, python-msgpack, python-openpyxl, python-psutil, python-pyarrow, python-pytest-benchmark, python-pytest-cov, python-scipy, python-sqlalchemy, python-tables, python-tqdm, python-xarray, python-xlrd, and python-wheel; add python-s3fs, python-setuptools, and python-versioneer. Change-Id: I86feaa9f1cd110ed2c430e9816d34da165bccb74 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-xarray-einstats: Update to 0.9.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-xarray-einstats): Update to 0.9.1. [propagated-inputs]: Add python-einops and python-numba. [native-inputs]: Remove python-einops and python-numba. Change-Id: Ic3e05114dc3d6343523aec222f527ef9653ed2d6 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
2026-01-25gnu: python-dask-image: Update to 2025.11.0.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-dask-image): Update to 2025.11.0. [arguments] <test-flags>: All tests passed. <phases>: Add 'fix-pytest-config; rework 'set-version to read from envar. [propagated-inputs]: Remove python-tifffile-for-dask-image; add python-tifffile. [native-inputs]: Remove python-setuptools-scm; add python-setuptools-scm-next. * gnu/packages/python-xyz.scm (python-tifffile-for-dask-image): Delete variable. Change-Id: I928c39c848f3a20d5eb51d10e4c8374891b8f0b0 Signed-off-by: Rutherther <rutherther@ditigal.xyz>
generated by cgit v1.3 (git 2.53.0) at 2026-05-28 15:26:42 +0000