summaryrefslogtreecommitdiff
path: root/gnu/packages/python-science.scm
AgeCommit message (Collapse)Author
2025-05-08gnu: python-einops: Update to 0.8.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-einops): Update to 0.8.1. [native-inputs]: Remove jupyter. Change-Id: I2d5c710990a77ca0fef480eaed4b59da6a10db27
2025-05-08gnu: python-adjusttext: Move to python-science.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-adjusttext): Move from here ... * gnu/packages/python-science.scm: ... to here. Change-Id: If8c5fa89736dbf8ae29169fb317d43d2c2fbd682
2025-05-04gnu: Add python-vector.Vinicius Monego
* gnu/packages/python-science.scm (python-vector): New variable. Change-Id: I77d72b0c18a0bc215cb2198ce5447e587b13d0fe
2025-05-04gnu: Add python-decaylanguage.Vinicius Monego
* gnu/packages/python-science.scm (python-decaylanguage): New variable. Change-Id: I5c709016f80b19cef22105bff42ca62b8f384f1b
2025-05-04gnu: Add python-particle.Vinicius Monego
* gnu/packages/python-science.scm (python-particle): New variable. Change-Id: Ib2462e25aadba797532c005a3b4d4e4a238a611e
2025-05-04gnu: Add python-hepunits.Vinicius Monego
* gnu/packages/python-science.scm (python-hepunits): New variable. Change-Id: I174495c4fdacd21491e9e7d5abdd7d5dd0e5ffe8
2025-05-04gnu: Add python-hist.Vinicius Monego
* gnu/packages/python-science.scm (python-hist): New variable. Change-Id: Ia3495b6d94a620b797318ffce162aa1d58e79049
2025-05-04gnu: Add python-histoprint.Vinicius Monego
* gnu/packages/python-science.scm (python-histoprint): New variable. Change-Id: I1ace11116c39e2c803afd10849c107c3f232273e
2025-05-04gnu: Add python-uhi.Vinicius Monego
* gnu/packages/python-science.scm (python-uhi): New variable. Change-Id: I12e802cfc9dd6473cac9657dc477e470238f1bbc
2025-05-04gnu: Add python-boost-histogram.Vinicius Monego
* gnu/packages/python-science.scm (python-boost-histogram): New variable. Change-Id: I91e73a0a3e3a698197b2d309bd5bdf388fd2697a
2025-05-04gnu: python-scikit-build-core: Update to 0.11.2.Vinicius Monego
* gnu/packages/python-science.scm (python-scikit-build-core): Update to 0.11.2. Change-Id: I66d04ba5ed89d3a9eb57df1e9491b8170d5b1571
2025-04-28gnu: python-pyqtgraph: Move to python-science.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pyqtgraph): Move from here ... * gnu/packages/python-science.scm: ... to here. Change-Id: I3de3c6a71fb2c5c49b76e03a026eae7deaa55840
2025-04-24gnu: python-pandera: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pandera) [source] <snippet>: Remove tests deletion and ignore them with pytest options which are working now. [arguments] <test-flags> Skip some more tests; run tests in parallel up to 8 thread, supported upstream. [propagated-inputs]: Remove python-hypothesis; add python-hypothesis-next and python-modin. [native-inputs]: Add python-pytest-xdist. Change-Id: I45482203519ceb2208a330d91c07d12b65e6ee53
2025-04-24gnu: python-modin: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-modin) [arguments] <test-flags>: Run test in up to 8 threads to improve performance, supported upstream. [native-inputs]: Remove python-coverage. Change-Id: Id298ca7ae204f87fc7b421f6dc2f80959c4c4f85
2025-04-19gnu: snakemake: Move inputs to propagated-inputs.Sharlatan Hellseher
* gnu/packages/python-science.scm (snakemake): Swap INPUTS to PROPAGATED-INPUTS as the package may be included in others. Change-Id: I034d8b18a6f4d145bf7b08584b73a5abd19f955e
2025-04-16gnu: Add snakemake.Nicolas Graves
* gnu/packages/python-science.scm (snakemake): New variable. Change-Id: Id61c7955684f5186b9dc884f0c9de4ec73f766ea Signed-off-by: Steve George <steve@futurile.net>
2025-04-16gnu: Add python-snakemake-interface-storage-plugins.Nicolas Graves
* gnu/packages/python-science.scm (python-snakemake-interface-storage-plugins): New variable. Change-Id: Ie74edfdc2535f7f26f0c6210a274dfc351336129 Signed-off-by: Steve George <steve@futurile.net>
2025-04-16gnu: Add python-snakemake-interface-software-deployment-plugins.Nicolas Graves
* gnu/packages/python-science.scm (python-snakemake-interface-software-deployment-plugins): New variable. Change-Id: Ia3f6beed3a3ea02607645ca127be52f328b429bb Signed-off-by: Steve George <steve@futurile.net>
2025-04-16gnu: Add python-snakemake-interface-report-plugins.Nicolas Graves
* gnu/packages/python-science.scm (python-snakemake-interface-report-plugins): New variable. Change-Id: I8705ba63df668d46ffda575b18ee97bb65acdc6c Signed-off-by: Steve George <steve@futurile.net>
2025-04-16gnu: Add python-snakemake-interface-executor-plugins.Nicolas Graves
* gnu/packages/python-science.scm (python-snakemake-interface-executor-plugins): New variable. Change-Id: I6bd9c6aec7293b8412c20dac04f82d867400d71c Signed-off-by: Steve George <steve@futurile.net>
2025-04-16gnu: Add python-snakemake-interface-common.Nicolas Graves
* gnu/packages/python-science.scm (python-snakemake-interface-common): New variable. Change-Id: Iaac3acb7f57c3b6aedda7fe48daccbd952faddd5 Signed-off-by: Steve George <steve@futurile.net>
2025-04-16gnu: python-pyglm: Move to maths.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pyglm): Move from here ... * gnu/packages/maths.scm: ... to here. * gnu/packages/gnome-xyz.scm: Add (gnu packages maths); remove (gnu packages python-science). Change-Id: I49ab732c1070210d005f8753c1e894c9abc3ee8b
2025-04-16gnu: python-pyglm: Update to 2.8.1.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-pyglm): Update to 2.8.1. [native-inputs]: Add python-pytest, python-setuptools, and python-wheel. Change-Id: I38ebaa301c3f08f1c011b8695a5595fffbebc06e
2025-04-16gnu: python-vaex-core: Update to 4.17.1.Nicolas Graves
* gnu/packages/python-science.scm (python-vaex-core): Update to 4.17.1. * gnu/packages/patches/python-vaex-core-fix-tsl-use.patch: Add patch. * gnu/local.mk: Record patch. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-04-16gnu: python-pytensor: Update to 2.28.3.Nicolas Graves
* gnu/packages/python-science.scm (python-pytensor): Update to 2.28.3. [arguments]{test-flags}: Use field. {phases}: Remove 'check phase replacement. Simplify 'versioneer. Add phase 'pre-check. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I8f324863438356ebc1ad3d62e86b5b17c416cd02 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-04-16gnu: python-numdifftools: Skip some tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numdifftools) [arguments] <test-flags>: Skip 7 tests failing with a NumPy 1.26.2. Change-Id: I5dc5865d0ac1ba47e79aac57d4e1768ecdb590be
2025-04-16gnu: python-unyt: Avoid deprecation failure in tests.Nicolas Graves
* gnu/packages/python-science.scm (python-unyt)[arguments] {test-flags}: Ignore failing test. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2025-04-16gnu: python-opt-einsum: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/python-science.scm (python-opt-einsum)[build-system]: Use pyproject-build-system. [arguments]: Remove. [native-inputs]: Remove python-pytest-pep8; add python-setuptools and python-wheel. Change-Id: I6da632c3c7e02ec13ab61124ce2984aa2675d996
2025-04-16gnu: python-paramz: Fix tests.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-paramz) [arguments] <test-flags>: Make them compatible with Pytest to allow some adjustments. [native-inputs]: Remove python-nose; add python-pytest. Change-Id: I66fbd374ce30e80f02fe43784740389a33783011
2025-04-16gnu: Update references to python3.10 directory.Ricardo Wurmus
* gnu/packages/admin.scm (ansible)[native-search-paths]: Refer to python3.11 directory. * gnu/packages/bioinformatics.scm (scvelo)[arguments]: Same. * gnu/packages/ebook.scm (calibre)[arguments]: Same. * gnu/packages/engineering.scm (cadabra2)[arguments]: Same. * gnu/packages/gnuzilla.scm (make-l10n-package)[arguments]: Same. * gnu/packages/machine-learning.scm (python-vosk)[arguments]: Same. * gnu/packages/python-science.scm (python-pandas-2)[arguments]: Same. * gnu/packages/version-control.scm (mercurial)[native-search-paths]: Same. * gnu/packages/irc.scm (go-gopkg-in-irc-v3): Update comment. Change-Id: If2ea1060b42b137474d5cfda6611df6e6fc85270
2025-03-31gnu: Add python-numdifftools.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-numdifftools): New variable. Change-Id: I0b5899e0bff10b488df5377c274eca63b26f9751
2025-03-31gnu: Add python-algopy.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-algopy): New variable. Change-Id: I6630f4677e0bd33f321cce9e6d1f40a6bf36c625
2025-03-30gnu: python-bottleneck: Update to 1.4.2.Vinicius Monego
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.4.2. [source]: Update URI. [build-system]: Use pyproject-build-system. [arguments]: Use G-Expressions. <#:phases>: Add phase 'rebuild-ext before 'check. Do not override the 'check phase. [native-inputs]: Remove python-hypothesis, python-pytest-runner. Add python-setuptools, python-wheel. Change-Id: I7a79b126d2bd069eaa4e3cf7d5f05bcb482fb67c
2025-03-23gnu: python-vedo: Update to 2025.5.3.Sharlatan Hellseher
fenics is no longer required and it fails to build, see #77195. * gnu/packages/python-science.scm (python-vedo): Update to 2025.5.3, fix build. [build-system]: Swap to pyproject-build-system. [arguments] <tests?>: Disable as depend on remote data. <phases>: Remove 'fix-tests, 'mpi-setup, use default 'check, keep 'sanity-check; add 'relax-requirements. [propagated-inputs]: Remove fenics; add python-pygments. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: Ifbe63d794f592083f2e65366404f152fda9b3136
2025-03-23gnu: python-tdda: Update to 2.2.17.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-tdda): Update to 2.2.17. [arguments] <test-flags>: Skip one failing test. <phases>: Use default 'check, add 'fix-Python3.11-datetime.UTC. [native-inputs]: Add python-chardet, python-pyarrow, python-pytest, and python-rich. Change-Id: I9d268a8656f51484c3d6c59a86b7537e50f864dc
2025-03-23gnu: python-gpy: Move to machine-learning.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-gpy): Move from here ... * gnu/packages/machine-learning.scm: ... to here. Change-Id: Id1c8574c166014c87ffa484ea84f798eb7f53844
2025-03-23gnu: python-gpy: Update to 1.13.2.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-gpy): Update to 1.13.2. Fix build and refresh package style. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I446821dace8cc9c99543f0940e400ca4fc081b08
2025-03-16gnu: python-pint: Move to python-science.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-pint): Move from here ... * gnu/packages/python-science.scm: ... to here. Change-Id: Iabfce6ac788e01d42307a678979077cd61618693
2025-03-03gnu: python-trimesh: Skip tests requiring network.Lars Bilke
* gnu/packages/python-science (python-trimesh)[arguments]<#:test-flags>: Skip network tests. Change-Id: I82389eca3baf14322875daa9aa33f74a1066c8e3 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2025-03-03gnu: python-pandas: Skip some tests on 32bit systems.Efraim Flashner
* gnu/packages/python-science.scm (python-pandas)[arguments]: Adjust the test-flags when not building on a 64bit system to skip some incompatible tests. Change-Id: Ic581cc6bf4ade2d92425c38df10bc45beaf4009e
2025-02-28gnu: Add python-mpsplines.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpsplines): New variable. Change-Id: I1ae05c5bff783f7716e578bfc01699a10d13c337
2025-02-28gnu: Add python-cmocean.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-cmocean): New variable. Change-Id: I8b304c0280832f202714df278960493cbd3b12df
2025-02-28gnu: python-mpl-scatter-density: Update to 0.8.Sharlatan Hellseher
* gnu/packages/python-science.scm (python-mpl-scatter-density): Update to 0.8. [source] <uri>: Adjust it as PyPI archive name has been changed upstream. Change-Id: Ic049ea153503cfa92c5d19b272afb00e64f7a28e
2025-02-27gnu: python-vaex-core: Update to 4.17.1.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core): Update to 4.17.1. [arguments]: Remove phase 'patch-for-pydantic. [native-inputs]: Use python-cython-3 instead of python-cython. Change-Id: I5fdb8f19b5d334058c5ece215a288ac4abd7647f
2025-02-27gnu: python-pandera: Use Pydantic 2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-pandera)[propagated-inputs]: Replace python-pydantic with python-pydantic-2. [arguments]: Disable one test. Change-Id: Ie222a484f4d8a540ffdf6db6da09e600723169d7
2025-02-27gnu: python-vaex-core: Use pyproject-build-system and Pydantic 2.Ricardo Wurmus
* gnu/packages/python-science.scm (python-vaex-core)[build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase; add phase 'patch-for-pydantic. [propagated-inputs]: Replace python-pydantic with python-pydantic-2; add python-pydantic-settings. [native-inputs]: Add python-setuptools and python-wheel. Change-Id: I0e3d4d30940f55e234a5971431dc1c3fec2abce3
2025-02-25gnu: python-pyvista: Update to 0.44.2.reza
* gnu/packages/python-science.scm (python-pyvista): Update to 0.44.2 [build-system]: Change to pyproject-build-system. [native-inputs]: Add native-inputs for testing. [modify-phases]: Enable sanity-check and check phase, disable failing tests and vtk dependency check and redirect $HOME variable. Change-Id: I4293e99be12d096e639e47b8066116ba519909a8 Signed-off-by: Christopher Baines <mail@cbaines.net>
2025-02-19gnu: Fix some misspellings.Efraim Flashner
Change-Id: I316652aff7418af4b8e83bea24638b1513f8aa97
2025-02-15gnu: python-plotnine: Update to 0.14.5.Ricardo Wurmus
* gnu/packages/python-science.scm (python-plotnine): Update to 0.14.5. [arguments]: Disable more image tests; add phase 'pretend-version. Change-Id: I7ba5cc47ff93187785b0d8c2f5e294e0d08c9f54
2025-02-11gnu: Add python-imagehash.Vinicius Monego
* gnu/packages/python-science.scm (python-imagehash): New variable. Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com> Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: Ie773b4504d97ac2678e0776a27eb661d909fed47
generated by cgit v1.3 (git 2.53.0) at 2026-05-28 15:14:11 +0000