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2024-09-06gnu: nnpack: Depend on python-peachpy only for x86_64.David Elsing
* gnu/packages/machine-learning.scm (nnpack)[native-inputs]: Provide python-peachpy only when 'target-x86-64?'.
2024-09-06gnu: Remove python-typing-extensions-4.10.David Elsing
* gnu/packages/machine-learning.scm (python-typing-extensions-4.10): Delete variable. * gnu/packages/machine-learning.scm (python-pytorch)[native-inputs] Replace python-typing-extensions-4.10 with python-typing-extensions.
2024-09-03gnu: tensorflow-lite: Fix build.Andy Tai
* gnu/packages/machine-learning.scm (tensorflow-lite): Fix build. [inputs]: Change flatbuffers-next to flatbuffers-23.1. * gnu/packages/serialization.scm (flatbuffers-23.1): New variable. Change-Id: I257c3563cb91cbf8e0f0874367aafced248ab4dc Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-09-02gnu: python-deepxde: Update to 1.12.1.Vinicius Monego
* gnu/packages/machine-learning.scm (python-deepxde): Update to 1.12.1. Change-Id: I7996c7686e1b6f97a4b54efc6153fe5adebd0b4b
2024-08-31gnu: ghmm: Import the correct set of modules.Maxim Cournoyer
* gnu/packages/machine-learning.scm (ghmm) [arguments] <modules>: Replace %default-gnu-imported-modules with %default-gnu-modules. Change-Id: I317b9eb60afd63eeb4643556e94cb26a1162abb4
2024-08-31build-systems: gnu: Export %default-gnu-imported-modules and ↵Maxim Cournoyer
%default-gnu-modules. Until now users would have to cargo cult or inspect the private %default-modules variable of (guix build-systems gnu) to discover which modules to include when extending the used modules via the #:modules argument. The renaming was automated via the command: $ git grep -l %gnu-build-system-modules | xargs sed 's/%gnu-build-system-modules/%default-gnu-imported-modules/' -i * guix/build-system/gnu.scm (%gnu-build-system-modules): Rename to... (%default-gnu-imported-modules): ... this. (%default-modules): Rename to... (%default-gnu-modules): ... this. Export. (dist-package, gnu-build, gnu-cross-build): Adjust accordingly. Change-Id: Idef307fff13cb76f3182d782b26e1cd3a5c757ee
2024-07-28gnu: python-pyro-ppl: Simplify inputs.Vinicius Monego
* gnu/packages/machine-learning.scm (python-pyro-ppl)[native-inputs]: Remove ninja, jupyter, python-black, python-flake8, python-graphviz, python-isort, python-lap, python-matplotlib, python-mypy, python-nbformat, python-nbsphinx, python-nbstripout, python-nbval, python-pandas, python-pillow, python-pypandoc, python-pytest, python-pytest-cov, python-pytest-xdist, python-scikit-learn, python-scipy, python-seaborn, python-sphinx, python-sphinx-rtd-theme, python-torchvision, python-visdom, python-wget, python-yapf. Change-Id: Id7a413fdbdd8a808dffb4804c8a7f04bf2c31bbc
2024-07-28gnu: python-pyro-ppl: Update to 1.9.1.Vinicius Monego
* gnu/packages/machine-learning.scm (python-pyro-ppl): Update to 1.9.1. [arguments]: Remove #:test-flags and skip all tests in #:tests?. Change-Id: If90024d904bb830df2868423a5947ecaf45b46fc
2024-07-28gnu: python-botorch: Update to 0.11.3.Vinicius Monego
* gnu/packages/machine-learning.scm (python-botorch): Update to 0.11.3. [arguments]<#:test-flags>: Skip a failing test. <#:phases>: Delete the 'lo-version phase. Change-Id: I110631da8c5e442eaf00daa1b42caff29d61b36b
2024-07-19gnu: python-keras: Update home page url.jgart
* gnu/packages/machine-learning.scm (python-keras) [home-page]: Update home page. Change-Id: I7e4bd1dc64dbbd042de5dc50036ae12ca7c76fc3
2024-07-17gnu: liblantern: Update to 0.13.0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern): Update to 0.13.0. Change-Id: I7725adf59e4506b2b5b301ca2f57c4f07e16f594
2024-07-11gnu: xnnpack: Fix supported systems.Efraim Flashner
* gnu/packages/machine-learning.scm (xnnpack)[supported-systems]: Fix typo in armhf-linux. Remove i686-mingw, x86_64-mingw. Change-Id: I2a7fe127af9825d71da7e3769d224a20db12d839
2024-07-11gnu: qnnpack: Fix supported systems.Efraim Flashner
* gnu/packages/machine-learning.scm (qnnpack)[supported-systems]: Fix typo in armhf-linux. Change-Id: I97e0b59af6e6dc63a40c2df69b920f532fb91d65
2024-07-10gnu: llama-cpp: Update commit and configure flags for shared library build.Andy Tai
* gnu/packages/machine-learning.scm (lama-cpp): Update to commit a5735e with pkg-config support. [arguments](configure-flags): Add cmake configure flag for shared library build and adjust arguments to make openblas found by cmake. (phases) 'install-python-scripts: Remove references to deleted scripts and add new ones upsteeam. Change-Id: I7c4bc219a22aa9a949e811b340c7cf745b176d14 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-07-05gnu: python-cma: Update to 3.4.0.Vinicius Monego
* gnu/packages/machine-learning.scm (python-cma): Update to 3.4.0. Change-Id: Ida92761e12069a2e91e0e276c3b873c03bcfefdd
2024-07-05gnu: python-gpytorch: Update to 1.12.Vinicius Monego
* gnu/packages/machine-learning.scm (python-gpytorch): Update to 1.12. [arguments]: Enable previously failing test. [propagated-inputs]: Add python-mpmath, python-scipy. Change-Id: I50b9787b2abee2438adaf486d842f4af0d32d162
2024-07-05gnu: python-deepxde: Update to 1.11.1.Vinicius Monego
* gnu/packages/machine-learning.scm (python-deepxde): Update to 1.11.1. [source]: Update URI. Change-Id: I63c34558a9b55f9267652b88bf88f55614cc631f
2024-06-18gnu: python-pytorch-for-r-torch: Adjust to new python-pytorch.David Elsing
* gnu/packages/machine-learning.scm (%python-pytorch-for-r-torch-src): Add patches. (python-pytorch-for-r-torch)[version]: Use %python-pytorch-for-r-torch-version. [source]: Use %python-pytorch-for-r-torch-src. [native-inputs]: Use 'modify-inputs'. [inputs]: Don't replace xnnpack. Replace qnnpack-pytorch with qnnpack-pytorch-for-r-torch and oneapi-dnnl with oneapi-dnnl-for-r-torch. [propagated-inputs]: Don't replace onnx and onnx-optimizer. * gnu/packages/patches/python-pytorch-for-r-torch-fix-codegen: New file. * gnu/packages/patches/python-pytorch-for-r-torch-system-libraries.patch: New file. * gnu/packages/patches/python-pytorch2-system-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Register them.
2024-06-18gnu: Add qnnpack-pytorch-for-r-torch.David Elsing
* gnu/packages/machine-learning.scm (%python-pytorch-for-r-torch-version): New variable. (%python-pytorch-for-r-torch-src): New variable. (qnnpack-pytorch-for-r-torch): New variable.
2024-06-18gnu: Add oneapi-dnnl-for-r-torch.David Elsing
* gnu/packages/machine-learning.scm (oneapi-dnnl-for-r-torch): New variable.
2024-06-18gnu: Add ideep-pytorch-for-r-torch.David Elsing
* gnu/packages/machine-learning.scm (ideep-pytorch-for-r-torch): New variable.
2024-06-18gnu: python-torchvision: Update to 0.17.1.David Elsing
* gnu/packages/machine-learning.scm (python-torchvision): Update to 0.17.1. [source]: Add snippet to remove "android" and "ios" directories.
2024-06-18gnu: Add python-pytorch-avx.David Elsing
* gnu/packages/machine-learning.scm (python-pytorch-avx): New variable.
2024-06-18gnu: python-pytorch: Update to 2.2.1 and unbundle dependencies.David Elsing
Autogenerated files are also regenerated. The tests can be run, but are disabled, as they require a long time. * gnu/packages/machine-learning.scm (python-pytorch): Update to 2.2.1. [version]: Use %python-pytorch-version. [source]: Use %python-pytorch-src. [arguments]: Remove 'make-things-writable phase. Add 'cmake-patches, 'disable-avx-dependencies, 'set-max-jobs, 'codegen1, 'codegen2, 'build2, 'install2 phases. Adjust 'use-system-libraries and 'check phases. [native-inputs]: Add doxygen, ideep-pytorch, pocketfft-cpp, python-expecttest, python-pytest-flakefinder, python-pytest-rerunfailures-13, python-pytest-shard, python-pytest-xdist, python-hypothesis, python-types-dataclasses, python-typing-extensions-4.10 and valgrind. [inputs]: Add asmjit, clog, flatbuffers-next, foxi, fxdiv, libuv, miniz-for-pytorch, qnnpack, qnnpack-pytorch and oneapi-dnnl. Use nnpack, oneapi-dnnl, qnnpack, qnnpack-pytorch and xnnpack only for supported systems. [propagated-inputs]: Add python-filelock, python-fsspec, python-jinja2, python-networkx, python-opt-einsum, python-optree, python-packaging, python-psutil and python-sympy. Remove python-cffi and python-six. Use cpuinfo only for supported systems. (%python-pytorch-src)[source]: Add patches. (python-pytorch2): Remove variable. * gnu/packages/patches/python-pytorch-runpath.patch: Adjust patch. * gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust patch. * gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: Remove file. * gnu/packages/patches/python-pytorch-fix-codegen.patch: New file. * gnu/packages/patches/python-pytorch-without-kineto: New file. * gnu/local.mk (dist_patch_DATA): Register them.
2024-06-18gnu: Add qnnpack-pytorch.David Elsing
This is an internal fork of QNNPACK in the PyTorch source tree. * gnu/packages/machine-learning.scm (%python-pytorch-version): New variable. (%python-pytorch-src): New variable. (qnnpack-pytorch): New variable.
2024-06-18gnu: Remove xnnpack-for-torch2.David Elsing
* gnu/packages/machine-learning.scm (xnnpack-for-torch2): Delete variable. (python-pytorch-for-r-torch)[inputs]: Remove field. * gnu/packages/patches/xnnpack-for-torch2-system-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2024-06-18gnu: xnnpack: Update to commit 51a9875.David Elsing
The tests which fail to build if building the shared library are removed by a patch. Autogenerated files are removed by a snippet and generated in a separate build phase. * gnu/packages/machine-learning.scm (xnnpack): Update to commit 51a9875. [source]: Add patch for tests. Add snippet to remove autogenerated files. [arguments]: New modules and phase arguments. [inputs]: Add clog and cpuinfo. [native-inputs]: New field. * gnu/packages/patches/xnnpack-remove-broken-tests.patch: Add file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/patches/xnnpack-system-libraries.patch: Update patch.
2024-06-18gnu: Add ideep-pytorch.David Elsing
* gnu/packages/machine-learning.scm (ideep-pytorch): New variable.
2024-06-18gnu: Add foxi.David Elsing
* gnu/packages/machine-learning.scm (foxi): New variable. * gnu/packages/patches/foxi-fix-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2024-06-18gnu: Add qnnpack.David Elsing
* gnu/packages/machine-learning.scm (qnnpack): New variable.
2024-06-18gnu: Add fbgemm.David Elsing
* gnu/packages/machine-learning.scm (fbgemm): New variable. * gnu/packages/patches/fbgemm-use-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2024-06-18gnu: Add tensorpipe.David Elsing
* gnu/packages/machine-learning.scm (tensorpipe): New variable.
2024-06-18gnu: oneapi-dnnl: Update to 3.3.5.David Elsing
* gnu/packages/machine-learning.scm (oneapi-dnnl): Update to 3.3.5. [supported-systems]: New field.
2024-06-18gnu: nnpack: Update to commit 70a77f4.David Elsing
* gnu/packages/machine-learning.scm (nnpack): Update to commit 70a77f4. [supported-systems]: New field.
2024-06-18gnu: Remove flatbuffers-next-shared.David Elsing
* gnu/packages/serialization.scm (flatbuffers-next-shared): Delete variable. * gnu/packages/machine-learning.scm (tensorflow-lite)[arguments]: Use flatbuffers-next instead of flatbuffers-next-shared.
2024-06-16gnu: Add python-autograd-gamma.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-autograd-gamma): New variable. Change-Id: I2b73b247388c06774afbf09df322acdc1d327eaf
2024-06-10gnu: onnx-optimizer-for-torch2: Hide package.Christopher Baines
As it duplicates onnx-optimizer. * gnu/packages/machine-learning.scm (onnx-optimizer-for-torch2): Hide package. Change-Id: I8a53805c1fbe57fac38c9de25ccc0929bddda36a
2024-05-13gnu: llama-cpp: Update to 0.0.0-2.fed0108.Andy Tai
As last update was in February and new changes for new models and memory leaks fixes since then. * gnu/packages/machine-learning.scm (llama-cpp): Update to 0.0.0-2.fed0108. [arguments]<#:phases>: Add 'disable-unrunable-tests' phase. Change replacement of 'install to be a post-install 'install-main' phase so libraries and header files are normally installed. Change-Id: Ia6532945f588747c4d58fdb7611d6a9c3c596705 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-11gnu: Add python-botorch.Vinicius Monego
* gnu/packages/machine-learning.scm (python-botorch): New variable. Change-Id: Iaa67584a3b72ff07bc8bbb92cfa60fde1d9d7647
2024-05-05gnu: python-scikit-learn-extra: Disable a validation test.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn-extra)[arguments]: Disable one test. Change-Id: I1309cb6a82dee1a714ddec59aa90692ccfcd885b
2024-05-05gnu: python-cleanlab: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.6.3. [arguments]: Disable tests that require "datasets" package; add phase 'remove-datasets. Change-Id: I6af99e3e749a10515328db4874974a3504658352
2024-05-05gnu: python-imbalanced-learn: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-imbalanced-learn): Update to 0.12.2. [native-inputs]: Remove python-numpydoc. Change-Id: I8af0017f76d5ab3a2d55a96c0ace6be22d57fb66
2024-05-05gnu: python-umap-learn: Disable failing test.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable one failing test. Change-Id: Ic8f5f60f7d7bea0c24b417932daab3d54813d5fd
2024-05-05gnu: python-umap-learn: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.6. Change-Id: If05cf1a9c7ad1d9fd0439bc888983608d70aea75
2024-05-05gnu: python-scikit-learn: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.4.2. [native-inputs]: Replace python-cython-0.29.35 with python-cython-3. Change-Id: Id8be08f931bf250a8ecb8bc46b44d7148b4c4a2f
2024-04-06gnu: xgboost: Update to 1.7.6.Vinicius Monego
* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to 1.7.6. (python-xgboost)[arguments]: Remove #:test-flags and disable tests. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch. Change-Id: Ib0eb015f72150ef82ce386eda26749e25f816e95
2024-04-05gnu: llama-cpp: Produce a portable binary unless tuned.Ludovic Courtès
* gnu/packages/machine-learning.scm (llama-cpp)[arguments]: Augment #:configure-flags. [properties]: New field. Co-authored-by: John Fremlin <john@fremlin.org> Change-Id: I9b3d72849107a6988fec94dc4a22614443338cb2
2024-04-05gnu: llama-cpp: Use OpenBLAS.John Fremlin
For faster prompt processing, OpenBLAS is recommended by https://github.com/ggerganov/llama.cpp * gnu/packages/machine-learning.scm (llama-cpp)[arguments]: Add #:configure-flags. [native-inputs]: Add pkg-config. [propagated-inputs]: Add openblas. Change-Id: Iaf6f22252da13e2d6f503992878b35b0da7de0aa Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-04-04gnu: kaldi-for-vosk: Remove dependency on lapack.Romain GARBAGE
* gnu/packages/machine-learning.scm (kaldi-for-vosk): Remove dependency to lapack. Change-Id: I0f5f508288ccb2e7fd086aabeffb5b0b4d3f96b2 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2024-04-04gnu: shogun: Switch to openblas.Romain GARBAGE
* gnu/packages/machine-learning.scm (shogun): Switch from lapack to openblas dependency. Change-Id: Ib8dde7d9ed9df4bda0eab945f3098a28d0e5927b Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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