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| author | Cayetano Santos <csantosb@inventati.org> | 2026-01-09 14:51:10 +0100 |
|---|---|---|
| committer | Cayetano Santos <csantosb@inventati.org> | 2026-01-09 14:51:18 +0100 |
| commit | bb106f7b8561682648fd3b6c3a74e52bea14b388 (patch) | |
| tree | 034338a359b2a301de7523956bbfba1e13a1f397 | |
| parent | 5f02ecf097d0266b0f3ce40b49718cf3d5f73e3b (diff) | |
gnu: flexbar: Update to 3.5.0.
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.5.0.
[arguments]: Use G-Expressions.
Change-Id: If8a61ea506d30eebf29ae1116d7950fce497cb19
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 17 insertions, 18 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2224d129c39..4847596ad1f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8448,7 +8448,7 @@ FLASH is used to merge RNA-seq data.") (define-public flexbar (package (name "flexbar") - (version "3.4.0") + (version "3.5.0") (source (origin (method git-fetch) (uri (git-reference @@ -8457,25 +8457,24 @@ FLASH is used to merge RNA-seq data.") (file-name (git-file-name name version)) (sha256 (base32 - "1pq9sxvdnldl14libk234m72dqhwgzs3acgl943wchwdqlcsi5r2")))) + "1w0c592wmi3xin2wlb9vmxp7f8f3s9nhl3y9ih4djrlfqyim70h9")))) (build-system cmake-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'do-not-tune-to-CPU - (lambda _ - (substitute* "src/CMakeLists.txt" - ((" -march=native") "")))) - (replace 'check - (lambda* (#:key outputs #:allow-other-keys) - (setenv "PATH" (string-append (getcwd) ":" (getenv "PATH"))) - (with-directory-excursion "../source/test" - (invoke "bash" "flexbar_test.sh")))) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (string-append (assoc-ref outputs "out"))) - (bin (string-append out "/bin/"))) - (install-file "flexbar" bin))))))) + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'do-not-tune-to-CPU + (lambda _ + (substitute* "src/CMakeLists.txt" + ((" -march=native") "")))) + (replace 'check + (lambda _ + (setenv "PATH" (string-append (getcwd) ":" (getenv "PATH"))) + (with-directory-excursion "../source/test" + (invoke "bash" "flexbar_test.sh")))) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (install-file "flexbar" (string-append #$output "/bin/"))))))) (inputs (list tbb-2020 zlib)) (native-inputs |