guix/gnu/packages/python-science.scm, branch rocq-codeberg-pr-v2

gnu: Add python-flox.

2026-03-30T23:59:38Z

* gnu/packages/python-science.scm (python-flox): New variable. Change-Id: I661c37869a28e65bd707ef09a909278d5412ae9a

gnu: Add python-numbagg.

2026-03-30T23:59:38Z

* gnu/packages/python-science.scm (python-numbagg): New variable. Change-Id: I49856891cdbfc3f85c0753d5d3ea344c58ac4565

gnu: python-polars-runtime-32: Fix build.

2026-03-30T16:28:35Z

* gnu/packages/python-science.scm (python-polars-runtime-32)[arguments]: In the prepare-cargo-build-system phase, add prepare-rust-crates phase from cargo-build-system. Change-Id: Ibec2f8b9299d7510a9258c73e8dc64a6b8e184d3

gnu: python-sparse: Update to 0.18.0.

2026-03-29T14:18:33Z

* gnu/packages/python-science.scm (python-sparse): Update to 0.18.0. [native-inputs]: Remove python-wheel. Change-Id: I524ff3eef96f73c6dc12efb3b60288d122dc4d8b

gnu: Reference the inherited ‘arguments’ value.

2026-03-20T12:27:15Z

This commit was made by running this command: sed -e's/substitute-keyword-arguments (package-arguments [a-zA-Z0-9-]\+)/substitute-keyword-arguments arguments/g' -i gnu/packages/*.scm … and then: 1. reverting changes from ‘gnu/packages/rust.scm’ and ‘gnu/packages/java.scm’ since they would incur derivation changes and/or breakage; 2. reverting the change for ‘gcc-final’ in ‘gnu/packages/commencement.scm’; 3. reverting the change for ‘onnx-optimizer’, ‘openquest’, and ‘certbot’, which use ‘substitute-keyword-arguments’ for arguments that are not inherited (and thus ‘arguments’ would be unbound); 4. reverting the change for ‘insight-toolkit-legacy’ and ‘wine64-staging’ which make bogus assumptions about inherited arguments. Change-Id: I122a7cf517b6b63cae38944b5d33ade4b1f5a89c

gnu: Add python-polars.

2026-03-10T10:46:17Z

* gnu/packages/python-science.scm (python-polars-runtime-32, python-polars): New variables. * gnu/packages/rust-crates.scm: Add python-polars-runtime-32. * gnu/packages/rust-sources.scm: Add rust-tikv-jemallocator-for-polars. Change-Id: Ib36d95a0102da990512002b29f0a55732922040b Signed-off-by: Efraim Flashner

gnu: python-scikit-image: Update to 0.26.0.

2026-03-08T00:49:45Z

This fixes a test failure. * gnu/packages/python-science.scm (python-scikit-image): Update to 0.26.0. [#:test-flags]: Remove --pyargs (otherwise no test would run). Add upstream issue reference in comment. [#:phases]: Delete argument. [native-inputs]: Add python-pytest-pretty. Change-Id: I4ecf593faa74174d941f47f8569caa7badada1ee

gnu: python-cvxpy: Fix intermittent build failure.

2026-03-07T02:09:48Z

* gnu/packages/python-science.scm (python-cvxpy)[arguments]<#:phases>{set-ci-environment}: New phase. Change-Id: I4e76b5e88c03f4b2c6915181231b700512d6f37a

gnu: Pin old pybind11 version.

2026-03-05T14:53:36Z

* gnu/packages/python-xyz.scm (pybind11): Move definition to (pybind11-2). (python-awkward-cpp, python-contourpy, python-hnswlib, python-dm-tree, python-matplotlib, python-pikepdf, python-optree, python-fusepy): Change reference to pybind11-2. * gnu/packages/astronomy.scm (aoflagger, python-galsim, python-pyclp), gnu/packages/bioinformatics.scm (python-metacells, python-strawc, python-coolbox, python-pyspoa, python-scvelo), gnu/packages/chemistry.scm (avogadrolibs), gnu/packages/computer-architecture.scm (gem5), gnu/packages/duckdb.scm (python-duckdb), gnu/packages/electronics.scm (nextpnr, prjtrellis), gnu/packages/engineering.scm (python-orocos-kinematics-dynamics), gnu/packages/geo.scm (ogs-serial), gnu/packages/graphics.scm (openshadinglanguage, openimageio), gnu/packages/image-processing.scm (opencolorio), gnu/packages/machine-learning.scm (python-fasttext, python-ml-dtypes, onnx, onnx-optimizer, onnxruntime, dlib, tensorflow-lite, tensorpipe, python-pytorch, python-torchvision, python-ctranslate2, python-hmmlearn, python-dlib), gnu/packages/maths.scm (python-accupy, python-ducc0), gnu/packages/networking.scm (libcamera), gnu/packages/opencl.scm (python-pyopencl), gnu/packages/package-management.scm (python-libmambapy), gnu/packages/physics.scm (python-brille, python-gofit), gnu/packages/python-check.scm (python-xdoctest), gnu/packages/python-science.scm (pyre, python-boost-histogram, python-cvxpy, python-iminuit, python-osqp, python-pyamg, python-qdldl, python-scikit-build-core, python-scipy, python-vaex-core, python-pyfma), gnu/packages/radio.scm (gnuradio, gr-osmosdr, gr-dsd, gr-iqbal, gr-satellites, limesuite-ng), gnu/packages/simulation.scm (fenics, python-dolfin-adjoint), gnu/packages/statistics.scm (python-diptest, python-george), gnu/packages/syndication.scm (syndication-domination): Change reference to pybind11-2. Change-Id: Ib6abc8580fc2b4c35172f251ff6ba7d80ced4b7b Signed-off-by: Gabriel Wicki

gnu: python-iminuit: Update to 2.32.0.

2026-03-02T02:38:56Z

* gnu/packages/python-science.scm (python-iminuit): Update to 2.32.0. Change-Id: Ib60c59e34813ccc2e6276bff95d0804916863e71