GNU transactional package management, distribution, deployment, and more! http://git.rostovtsev.org/guix/atom?h=rocq-codeberg-pr-v1 2025-04-16T09:46:28Z 2025-04-16T09:46:28Z Nicolas Graves ngraves@ngraves.fr 2025-04-04T19:16:55Z urn:sha1:db14ce5c4d413d513f25e41119fca522af4acd94 * gnu/packages/bioinformatics.scm (python-bed-reader): Fix build and enable tests. [source]{snippet}: Delete bundled website-related javascript. {patches}: Use the store-cached instead of pooch-cached samples. [arguments]{tests?}: Enable them. {cargo-test-flags}: Skip doc tests. Skip failing tests. {cargo-inputs}: Improve style. {cargo-development-inputs}: Improve style. {phases}: Add phases 'set-data-path, 'patch-data-path to use store-cached samples for library and tests. Rewrite phase 'prepare-python-module to rely more on the existing info in pyproject.toml. Rewrite phase 'check-python entirely, and marginaly rewrite phase 'install-python-library to match 'check-python phase style. {modules}: Adapt accordingly. {propagated-inputs}: Remove python-pooch. Add python-scipy. (bed-sample-files): Add origin, used in python-bed-reader. * gnu/packages/patches/python-bed-reader-use-store-samples.patch: Add patch. * gnu/local.mk: Record patch. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>